miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26265 5' -58.7 NC_005345.2 + 26931 0.66 0.537483
Target:  5'- gCGCAUgGUCGAGGUCaGGCAgacgaucccGUCCc -3'
miRNA:   3'- gGUGUG-CGGCUCCAGcCCGUa--------CAGGc -5'
26265 5' -58.7 NC_005345.2 + 10058 0.66 0.527151
Target:  5'- aCCgACgACGCCGAcGUCGcGGCGagcGUCCa -3'
miRNA:   3'- -GG-UG-UGCGGCUcCAGC-CCGUa--CAGGc -5'
26265 5' -58.7 NC_005345.2 + 9713 0.66 0.527151
Target:  5'- gCACAucaguccguCGCCGGGGUCGaGCggGUCgGc -3'
miRNA:   3'- gGUGU---------GCGGCUCCAGCcCGuaCAGgC- -5'
26265 5' -58.7 NC_005345.2 + 15490 0.66 0.515873
Target:  5'- cCCGagcuGCGCCGcaaGUCGGGCGuugcucuUGUCCu -3'
miRNA:   3'- -GGUg---UGCGGCuc-CAGCCCGU-------ACAGGc -5'
26265 5' -58.7 NC_005345.2 + 5224 0.66 0.510779
Target:  5'- gCUACACGCCGucgGGGUgcccgcgguacacggUGGGCGUGaCgGg -3'
miRNA:   3'- -GGUGUGCGGC---UCCA---------------GCCCGUACaGgC- -5'
26265 5' -58.7 NC_005345.2 + 32543 0.67 0.466928
Target:  5'- gCCG-ACGCCGAgggGGUCGGGCcacgCCa -3'
miRNA:   3'- -GGUgUGCGGCU---CCAGCCCGuacaGGc -5'
26265 5' -58.7 NC_005345.2 + 18187 0.67 0.472796
Target:  5'- aCCGCGCGCCGuuccaaugcacccGGUCGcGGcCGUGcaCCGu -3'
miRNA:   3'- -GGUGUGCGGCu------------CCAGC-CC-GUACa-GGC- -5'
26265 5' -58.7 NC_005345.2 + 5749 0.67 0.476729
Target:  5'- gCCGCA-GCCGAGGacugcgcCGaGGCG-GUCCGc -3'
miRNA:   3'- -GGUGUgCGGCUCCa------GC-CCGUaCAGGC- -5'
26265 5' -58.7 NC_005345.2 + 44692 0.67 0.486631
Target:  5'- -gACGCGCCacucaGGGGU-GGGCGUG-CCa -3'
miRNA:   3'- ggUGUGCGG-----CUCCAgCCCGUACaGGc -5'
26265 5' -58.7 NC_005345.2 + 43608 0.67 0.496629
Target:  5'- uUCGuCACGCUGAucaGGUCGGGCccc-CCGg -3'
miRNA:   3'- -GGU-GUGCGGCU---CCAGCCCGuacaGGC- -5'
26265 5' -58.7 NC_005345.2 + 18499 0.67 0.496629
Target:  5'- aCC-CGgGUCGAGGUCGagcgaguacgcGGCGUcggcGUCCGg -3'
miRNA:   3'- -GGuGUgCGGCUCCAGC-----------CCGUA----CAGGC- -5'
26265 5' -58.7 NC_005345.2 + 33898 0.69 0.383857
Target:  5'- cUCGCGCgGCCGGGcagcugauccGUaCGGGCAUGUCa- -3'
miRNA:   3'- -GGUGUG-CGGCUC----------CA-GCCCGUACAGgc -5'
26265 5' -58.7 NC_005345.2 + 9959 0.7 0.326394
Target:  5'- cCCGCG-GCCcGGGuUCGGGCugggGUCCGc -3'
miRNA:   3'- -GGUGUgCGGcUCC-AGCCCGua--CAGGC- -5'
26265 5' -58.7 NC_005345.2 + 42968 0.7 0.326394
Target:  5'- gCACGCGCaCGAaccgGGcCGGGCGUgugGUCCu -3'
miRNA:   3'- gGUGUGCG-GCU----CCaGCCCGUA---CAGGc -5'
26265 5' -58.7 NC_005345.2 + 18203 0.7 0.318725
Target:  5'- gCGCGCGCCGA-GUgGGGCGccgcGUUCGg -3'
miRNA:   3'- gGUGUGCGGCUcCAgCCCGUa---CAGGC- -5'
26265 5' -58.7 NC_005345.2 + 873 0.7 0.303796
Target:  5'- gCGCACuGCgCGcGGUCGGGCGgcaucaguucGUCCGg -3'
miRNA:   3'- gGUGUG-CG-GCuCCAGCCCGUa---------CAGGC- -5'
26265 5' -58.7 NC_005345.2 + 32029 0.72 0.236605
Target:  5'- aCCGCGCuggauccggcaugGCUGccGGUCGGGCugcUGUCCGa -3'
miRNA:   3'- -GGUGUG-------------CGGCu-CCAGCCCGu--ACAGGC- -5'
26265 5' -58.7 NC_005345.2 + 42232 0.72 0.225449
Target:  5'- gCGCGCGCCGAGGUCgacacGGGCGggaaCGu -3'
miRNA:   3'- gGUGUGCGGCUCCAG-----CCCGUacagGC- -5'
26265 5' -58.7 NC_005345.2 + 45661 0.73 0.219758
Target:  5'- cCCACGagccuCGCgCGGGuaacGUCGaGGCAUGUCCGa -3'
miRNA:   3'- -GGUGU-----GCG-GCUC----CAGC-CCGUACAGGC- -5'
26265 5' -58.7 NC_005345.2 + 41513 0.66 0.559397
Target:  5'- gCCGCACGCCucgauguucugggccGGGUCGGcGaUGUGcUCCGa -3'
miRNA:   3'- -GGUGUGCGGc--------------UCCAGCC-C-GUAC-AGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.