miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26265 5' -58.7 NC_005345.2 + 47941 0.68 0.438172
Target:  5'- aCCGCGCGgCGuGGcccgCGGGCcgGacugCCGa -3'
miRNA:   3'- -GGUGUGCgGCuCCa---GCCCGuaCa---GGC- -5'
26265 5' -58.7 NC_005345.2 + 45661 0.73 0.219758
Target:  5'- cCCACGagccuCGCgCGGGuaacGUCGaGGCAUGUCCGa -3'
miRNA:   3'- -GGUGU-----GCG-GCUC----CAGC-CCGUACAGGC- -5'
26265 5' -58.7 NC_005345.2 + 45558 0.7 0.34214
Target:  5'- -aGCG-GCCGAGGUCgGGGCGgg-CCGg -3'
miRNA:   3'- ggUGUgCGGCUCCAG-CCCGUacaGGC- -5'
26265 5' -58.7 NC_005345.2 + 45469 0.71 0.262252
Target:  5'- aCgGCG-GCCGGGGU-GGGCAUGUCgGc -3'
miRNA:   3'- -GgUGUgCGGCUCCAgCCCGUACAGgC- -5'
26265 5' -58.7 NC_005345.2 + 44692 0.67 0.486631
Target:  5'- -gACGCGCCacucaGGGGU-GGGCGUG-CCa -3'
miRNA:   3'- ggUGUGCGG-----CUCCAgCCCGUACaGGc -5'
26265 5' -58.7 NC_005345.2 + 44019 0.66 0.531275
Target:  5'- uCCugAuCGCCG-GGUUcggaaagaccuguugGGGUGUGUCCu -3'
miRNA:   3'- -GGugU-GCGGCuCCAG---------------CCCGUACAGGc -5'
26265 5' -58.7 NC_005345.2 + 43608 0.67 0.496629
Target:  5'- uUCGuCACGCUGAucaGGUCGGGCccc-CCGg -3'
miRNA:   3'- -GGU-GUGCGGCU---CCAGCCCGuacaGGC- -5'
26265 5' -58.7 NC_005345.2 + 42968 0.7 0.326394
Target:  5'- gCACGCGCaCGAaccgGGcCGGGCGUgugGUCCu -3'
miRNA:   3'- gGUGUGCG-GCU----CCaGCCCGUA---CAGGc -5'
26265 5' -58.7 NC_005345.2 + 42379 1.09 0.000479
Target:  5'- gCCACACGCCGAGGUCGGGCAUGUCCGc -3'
miRNA:   3'- -GGUGUGCGGCUCCAGCCCGUACAGGC- -5'
26265 5' -58.7 NC_005345.2 + 42232 0.72 0.225449
Target:  5'- gCGCGCGCCGAGGUCgacacGGGCGggaaCGu -3'
miRNA:   3'- gGUGUGCGGCUCCAG-----CCCGUacagGC- -5'
26265 5' -58.7 NC_005345.2 + 41513 0.66 0.559397
Target:  5'- gCCGCACGCCucgauguucugggccGGGUCGGcGaUGUGcUCCGa -3'
miRNA:   3'- -GGUGUGCGGc--------------UCCAGCC-C-GUAC-AGGC- -5'
26265 5' -58.7 NC_005345.2 + 40247 0.68 0.419575
Target:  5'- uCCugGCGagcggggaCGGGGcgccggCGGGCAUgaGUCCGg -3'
miRNA:   3'- -GGugUGCg-------GCUCCa-----GCCCGUA--CAGGC- -5'
26265 5' -58.7 NC_005345.2 + 40213 0.68 0.419575
Target:  5'- gCAgcUACGUCGAgacggugccGGUCGGGCAguUCCGg -3'
miRNA:   3'- gGU--GUGCGGCU---------CCAGCCCGUacAGGC- -5'
26265 5' -58.7 NC_005345.2 + 39754 0.66 0.510779
Target:  5'- gCCACGCGCCgucgacgacggcgagGAGGaguggCGGGUGUGgacgCUGc -3'
miRNA:   3'- -GGUGUGCGG---------------CUCCa----GCCCGUACa---GGC- -5'
26265 5' -58.7 NC_005345.2 + 39511 0.7 0.318725
Target:  5'- cCCACACGCCGucGGucUCGGGCAcGg-CGa -3'
miRNA:   3'- -GGUGUGCGGCu-CC--AGCCCGUaCagGC- -5'
26265 5' -58.7 NC_005345.2 + 36025 0.66 0.558347
Target:  5'- aCAUgauCGCCaAGaUCGGGCA-GUCCGg -3'
miRNA:   3'- gGUGu--GCGGcUCcAGCCCGUaCAGGC- -5'
26265 5' -58.7 NC_005345.2 + 33898 0.69 0.383857
Target:  5'- cUCGCGCgGCCGGGcagcugauccGUaCGGGCAUGUCa- -3'
miRNA:   3'- -GGUGUG-CGGCUC----------CA-GCCCGUACAGgc -5'
26265 5' -58.7 NC_005345.2 + 32896 0.74 0.188145
Target:  5'- cCCGCAgGCUGGGGgcgcugCGGGCcgGUCg- -3'
miRNA:   3'- -GGUGUgCGGCUCCa-----GCCCGuaCAGgc -5'
26265 5' -58.7 NC_005345.2 + 32543 0.67 0.466928
Target:  5'- gCCG-ACGCCGAgggGGUCGGGCcacgCCa -3'
miRNA:   3'- -GGUgUGCGGCU---CCAGCCCGuacaGGc -5'
26265 5' -58.7 NC_005345.2 + 32029 0.72 0.236605
Target:  5'- aCCGCGCuggauccggcaugGCUGccGGUCGGGCugcUGUCCGa -3'
miRNA:   3'- -GGUGUG-------------CGGCu-CCAGCCCGu--ACAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.