miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26267 3' -54.9 NC_005345.2 + 46046 0.68 0.569951
Target:  5'- cGGUauguccgGGGCCcgaGGGUCGAUcagGCGGCCGg -3'
miRNA:   3'- -CCAa------CUUGG---CCUAGCUGa--CGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 30877 0.68 0.569951
Target:  5'- gGGUgcuccgGGugCGGG-CGACggcGCGGCCGg -3'
miRNA:   3'- -CCAa-----CUugGCCUaGCUGa--CGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 48717 0.68 0.5809
Target:  5'- aGGUgaaGAACCGGGacacCGGCcgcauggagugGUGGCCGCg -3'
miRNA:   3'- -CCAa--CUUGGCCUa---GCUGa----------CGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 6360 0.68 0.591891
Target:  5'- ---gGcGCCGGGUUGGCcGCGGUgGCg -3'
miRNA:   3'- ccaaCuUGGCCUAGCUGaCGCCGgUG- -5'
26267 3' -54.9 NC_005345.2 + 8379 0.67 0.669267
Target:  5'- aGGUgugGAACCG---CGGCcgGCGGCCGa -3'
miRNA:   3'- -CCAa--CUUGGCcuaGCUGa-CGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 37695 0.67 0.669267
Target:  5'- cGGccgUGGGCCgccaguccugcgGGAUCGcGCUGCGGCgCGg -3'
miRNA:   3'- -CCa--ACUUGG------------CCUAGC-UGACGCCG-GUg -5'
26267 3' -54.9 NC_005345.2 + 33501 0.67 0.680263
Target:  5'- ---cGGGCCcGGUCGcAUUGCGGCCcCg -3'
miRNA:   3'- ccaaCUUGGcCUAGC-UGACGCCGGuG- -5'
26267 3' -54.9 NC_005345.2 + 28207 0.69 0.537445
Target:  5'- aGUUGGGCaGGGggaACUGCGGCCAa -3'
miRNA:   3'- cCAACUUGgCCUagcUGACGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 31952 0.69 0.505602
Target:  5'- gGGUgcgGGugCGGGUgCGGgUGCGGCUg- -3'
miRNA:   3'- -CCAa--CUugGCCUA-GCUgACGCCGGug -5'
26267 3' -54.9 NC_005345.2 + 19261 0.77 0.185377
Target:  5'- ---aGGACCGGGaugcCGACgGCGGCCGCg -3'
miRNA:   3'- ccaaCUUGGCCUa---GCUGaCGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 34032 0.75 0.22961
Target:  5'- gGGgccgGAccguCCGGAUCGACggcgagaucaGCGGCCGCg -3'
miRNA:   3'- -CCaa--CUu---GGCCUAGCUGa---------CGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 45571 0.74 0.289674
Target:  5'- gGGgcGGGCCGGuugCGGCcgGgGGCCGCg -3'
miRNA:   3'- -CCaaCUUGGCCua-GCUGa-CgCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 37040 0.73 0.304592
Target:  5'- cGGgcGAGCCGGGaucCGGCcgGCGGCgACg -3'
miRNA:   3'- -CCaaCUUGGCCUa--GCUGa-CGCCGgUG- -5'
26267 3' -54.9 NC_005345.2 + 25664 0.72 0.387893
Target:  5'- cGGacGAGCCGaaguGAUCGGcCUGCGGCgACu -3'
miRNA:   3'- -CCaaCUUGGC----CUAGCU-GACGCCGgUG- -5'
26267 3' -54.9 NC_005345.2 + 36902 0.71 0.425156
Target:  5'- ---cGAGCCGGGccugcucgcUCGACUcGCGGUCAg -3'
miRNA:   3'- ccaaCUUGGCCU---------AGCUGA-CGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 43513 0.71 0.425156
Target:  5'- cGGUgccGAUCGGGUCGGCgaucaccgcGuCGGCCACg -3'
miRNA:   3'- -CCAac-UUGGCCUAGCUGa--------C-GCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 34760 0.7 0.454463
Target:  5'- --gUGcAGCCGGAUCGGCacCGGCCGg -3'
miRNA:   3'- ccaAC-UUGGCCUAGCUGacGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 34994 0.7 0.454463
Target:  5'- aGGUacucgGcGCCGGggCGcuGCgGCGGCCACg -3'
miRNA:   3'- -CCAa----CuUGGCCuaGC--UGaCGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 31268 0.7 0.464473
Target:  5'- gGGUgcgcgGGugCGGGggCGGgUGCGcGCCACg -3'
miRNA:   3'- -CCAa----CUugGCCUa-GCUgACGC-CGGUG- -5'
26267 3' -54.9 NC_005345.2 + 19412 0.7 0.474596
Target:  5'- ---cGAGCUcGGUCGGCUGCG-CCGCg -3'
miRNA:   3'- ccaaCUUGGcCUAGCUGACGCcGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.