miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26267 3' -54.9 NC_005345.2 + 33566 0.67 0.64718
Target:  5'- aGGccUGAaaACCGGAcucgCGGCUgucGCGGUCGCc -3'
miRNA:   3'- -CCa-ACU--UGGCCUa---GCUGA---CGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 22258 0.66 0.71185
Target:  5'- aGGUgcugccgUGGGCgcagCGGAUCGuCgagGCGGCCGg -3'
miRNA:   3'- -CCA-------ACUUG----GCCUAGCuGa--CGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 7361 0.67 0.63611
Target:  5'- cGGUggcGcAGCCGGG-CGGggGUGGCCGCu -3'
miRNA:   3'- -CCAa--C-UUGGCCUaGCUgaCGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 24650 0.68 0.602917
Target:  5'- gGGUUGGucGCC-GAUCGA--GCGGCuCACg -3'
miRNA:   3'- -CCAACU--UGGcCUAGCUgaCGCCG-GUG- -5'
26267 3' -54.9 NC_005345.2 + 30685 0.66 0.702105
Target:  5'- gGGUcGAcgauCCGGc-CGGCUGCggguGGCCGCg -3'
miRNA:   3'- -CCAaCUu---GGCCuaGCUGACG----CCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 41531 0.67 0.665961
Target:  5'- --cUGGGCCGGGUCGGCgaugugcuccgacacCGGCCuCg -3'
miRNA:   3'- ccaACUUGGCCUAGCUGac-------------GCCGGuG- -5'
26267 3' -54.9 NC_005345.2 + 13633 0.66 0.723671
Target:  5'- ---gGAACCGGA-CGGC-GCGGCgugaGCg -3'
miRNA:   3'- ccaaCUUGGCCUaGCUGaCGCCGg---UG- -5'
26267 3' -54.9 NC_005345.2 + 7034 0.66 0.734322
Target:  5'- cGGUcGAccgGCCGGcgAUCGAg-GCGGCC-Cg -3'
miRNA:   3'- -CCAaCU---UGGCC--UAGCUgaCGCCGGuG- -5'
26267 3' -54.9 NC_005345.2 + 9166 0.68 0.591891
Target:  5'- gGGUgcacGGGCCGG-UCGugUGCGaGCUg- -3'
miRNA:   3'- -CCAa---CUUGGCCuAGCugACGC-CGGug -5'
26267 3' -54.9 NC_005345.2 + 1331 0.68 0.5809
Target:  5'- uGGUUGccGGCCGGGUCG-CgguaacGCGccuGCCACg -3'
miRNA:   3'- -CCAAC--UUGGCCUAGCuGa-----CGC---CGGUG- -5'
26267 3' -54.9 NC_005345.2 + 35958 0.68 0.609546
Target:  5'- --aUGAGCgGGGUUGACUuccugucggacccCGGCCGCa -3'
miRNA:   3'- ccaACUUGgCCUAGCUGAc------------GCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 7744 0.67 0.625036
Target:  5'- ---aGGACCGGcUCGACgGCacGCCGCu -3'
miRNA:   3'- ccaaCUUGGCCuAGCUGaCGc-CGGUG- -5'
26267 3' -54.9 NC_005345.2 + 18585 0.68 0.602917
Target:  5'- cGGgaacaccGCCGGGUCGAaaGCGGUCGg -3'
miRNA:   3'- -CCaacu---UGGCCUAGCUgaCGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 8379 0.67 0.669267
Target:  5'- aGGUgugGAACCG---CGGCcgGCGGCCGa -3'
miRNA:   3'- -CCAa--CUUGGCcuaGCUGa-CGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 19261 0.77 0.185377
Target:  5'- ---aGGACCGGGaugcCGACgGCGGCCGCg -3'
miRNA:   3'- ccaaCUUGGCCUa---GCUGaCGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 34032 0.75 0.22961
Target:  5'- gGGgccgGAccguCCGGAUCGACggcgagaucaGCGGCCGCg -3'
miRNA:   3'- -CCaa--CUu---GGCCUAGCUGa---------CGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 45571 0.74 0.289674
Target:  5'- gGGgcGGGCCGGuugCGGCcgGgGGCCGCg -3'
miRNA:   3'- -CCaaCUUGGCCua-GCUGa-CgCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 37040 0.73 0.304592
Target:  5'- cGGgcGAGCCGGGaucCGGCcgGCGGCgACg -3'
miRNA:   3'- -CCaaCUUGGCCUa--GCUGa-CGCCGgUG- -5'
26267 3' -54.9 NC_005345.2 + 30237 0.69 0.560141
Target:  5'- cGG-UGAGCCGG-UCGACgacggugcggguccgGCcGGUCACa -3'
miRNA:   3'- -CCaACUUGGCCuAGCUGa--------------CG-CCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 33959 0.69 0.559054
Target:  5'- cGGaUGAcUCGGAUCGAgggUGgGGCCAUg -3'
miRNA:   3'- -CCaACUuGGCCUAGCUg--ACgCCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.