miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26267 3' -54.9 NC_005345.2 + 18585 0.68 0.602917
Target:  5'- cGGgaacaccGCCGGGUCGAaaGCGGUCGg -3'
miRNA:   3'- -CCaacu---UGGCCUAGCUgaCGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 19106 0.66 0.727944
Target:  5'- uGGcUGAugUGGGcgcucaccgcauggUGGCUGCGGgCCGCa -3'
miRNA:   3'- -CCaACUugGCCUa-------------GCUGACGCC-GGUG- -5'
26267 3' -54.9 NC_005345.2 + 19261 0.77 0.185377
Target:  5'- ---aGGACCGGGaugcCGACgGCGGCCGCg -3'
miRNA:   3'- ccaaCUUGGCCUa---GCUGaCGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 19300 0.66 0.702105
Target:  5'- ---cGGACCGGGuccuUCGuCUuccacGUGGCCGCg -3'
miRNA:   3'- ccaaCUUGGCCU----AGCuGA-----CGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 19412 0.7 0.474596
Target:  5'- ---cGAGCUcGGUCGGCUGCG-CCGCg -3'
miRNA:   3'- ccaaCUUGGcCUAGCUGACGCcGGUG- -5'
26267 3' -54.9 NC_005345.2 + 20283 0.69 0.541745
Target:  5'- ---cGAACCGGAUCGuGCcgGCgacgucggucuuaccGGCCGCg -3'
miRNA:   3'- ccaaCUUGGCCUAGC-UGa-CG---------------CCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 20503 0.71 0.424199
Target:  5'- cGGUcgGGGCUuuccgcugccccgGGAUCGGcCUGCGGCgACa -3'
miRNA:   3'- -CCAa-CUUGG-------------CCUAGCU-GACGCCGgUG- -5'
26267 3' -54.9 NC_005345.2 + 21779 0.74 0.300055
Target:  5'- cGGgcGAGCCGGGgucggguggacugauUCGAUggcgGCGGCCGa -3'
miRNA:   3'- -CCaaCUUGGCCU---------------AGCUGa---CGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 21791 0.66 0.702105
Target:  5'- ---cGAGCCGGAcagcCGACgGCGGaaguaCCGCg -3'
miRNA:   3'- ccaaCUUGGCCUa---GCUGaCGCC-----GGUG- -5'
26267 3' -54.9 NC_005345.2 + 22258 0.66 0.71185
Target:  5'- aGGUgcugccgUGGGCgcagCGGAUCGuCgagGCGGCCGg -3'
miRNA:   3'- -CCA-------ACUUG----GCCUAGCuGa--CGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 24650 0.68 0.602917
Target:  5'- gGGUUGGucGCC-GAUCGA--GCGGCuCACg -3'
miRNA:   3'- -CCAACU--UGGcCUAGCUgaCGCCG-GUG- -5'
26267 3' -54.9 NC_005345.2 + 25664 0.72 0.387893
Target:  5'- cGGacGAGCCGaaguGAUCGGcCUGCGGCgACu -3'
miRNA:   3'- -CCaaCUUGGC----CUAGCU-GACGCCGgUG- -5'
26267 3' -54.9 NC_005345.2 + 27036 0.71 0.415641
Target:  5'- gGGUcGuGCCGG-UCG-UUGUGGCCACg -3'
miRNA:   3'- -CCAaCuUGGCCuAGCuGACGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 28207 0.69 0.537445
Target:  5'- aGUUGGGCaGGGggaACUGCGGCCAa -3'
miRNA:   3'- cCAACUUGgCCUagcUGACGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 29938 0.71 0.425156
Target:  5'- gGGgaGGACCGGcUCGACgucGgGGCCGu -3'
miRNA:   3'- -CCaaCUUGGCCuAGCUGa--CgCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 30237 0.69 0.560141
Target:  5'- cGG-UGAGCCGG-UCGACgacggugcggguccgGCcGGUCACa -3'
miRNA:   3'- -CCaACUUGGCCuAGCUGa--------------CG-CCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 30685 0.66 0.702105
Target:  5'- gGGUcGAcgauCCGGc-CGGCUGCggguGGCCGCg -3'
miRNA:   3'- -CCAaCUu---GGCCuaGCUGACG----CCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 30877 0.68 0.569951
Target:  5'- gGGUgcuccgGGugCGGG-CGACggcGCGGCCGg -3'
miRNA:   3'- -CCAa-----CUugGCCUaGCUGa--CGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 31268 0.7 0.464473
Target:  5'- gGGUgcgcgGGugCGGGggCGGgUGCGcGCCACg -3'
miRNA:   3'- -CCAa----CUugGCCUa-GCUgACGC-CGGUG- -5'
26267 3' -54.9 NC_005345.2 + 31952 0.69 0.505602
Target:  5'- gGGUgcgGGugCGGGUgCGGgUGCGGCUg- -3'
miRNA:   3'- -CCAa--CUugGCCUA-GCUgACGCCGGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.