Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26267 | 3' | -54.9 | NC_005345.2 | + | 19412 | 0.7 | 0.474596 |
Target: 5'- ---cGAGCUcGGUCGGCUGCG-CCGCg -3' miRNA: 3'- ccaaCUUGGcCUAGCUGACGCcGGUG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 36258 | 0.7 | 0.495166 |
Target: 5'- cGGaUGAACCaGGAgagCGGCggcaaccCGGCCGCg -3' miRNA: 3'- -CCaACUUGG-CCUa--GCUGac-----GCCGGUG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 2641 | 0.7 | 0.495166 |
Target: 5'- cGGacuGACCGGGUCaaaGCUcgcaGCGGCCACg -3' miRNA: 3'- -CCaacUUGGCCUAGc--UGA----CGCCGGUG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 31952 | 0.69 | 0.505602 |
Target: 5'- gGGUgcgGGugCGGGUgCGGgUGCGGCUg- -3' miRNA: 3'- -CCAa--CUugGCCUA-GCUgACGCCGGug -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 28207 | 0.69 | 0.537445 |
Target: 5'- aGUUGGGCaGGGggaACUGCGGCCAa -3' miRNA: 3'- cCAACUUGgCCUagcUGACGCCGGUg -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 20283 | 0.69 | 0.541745 |
Target: 5'- ---cGAACCGGAUCGuGCcgGCgacgucggucuuaccGGCCGCg -3' miRNA: 3'- ccaaCUUGGCCUAGC-UGa-CG---------------CCGGUG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 33959 | 0.69 | 0.559054 |
Target: 5'- cGGaUGAcUCGGAUCGAgggUGgGGCCAUg -3' miRNA: 3'- -CCaACUuGGCCUAGCUg--ACgCCGGUG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 30237 | 0.69 | 0.560141 |
Target: 5'- cGG-UGAGCCGG-UCGACgacggugcggguccgGCcGGUCACa -3' miRNA: 3'- -CCaACUUGGCCuAGCUGa--------------CG-CCGGUG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 12669 | 0.68 | 0.568859 |
Target: 5'- cGUUGGcguacccGCCGGGUCGGUUGUaGGCCGa -3' miRNA: 3'- cCAACU-------UGGCCUAGCUGACG-CCGGUg -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 30877 | 0.68 | 0.569951 |
Target: 5'- gGGUgcuccgGGugCGGG-CGACggcGCGGCCGg -3' miRNA: 3'- -CCAa-----CUugGCCUaGCUGa--CGCCGGUg -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 46046 | 0.68 | 0.569951 |
Target: 5'- cGGUauguccgGGGCCcgaGGGUCGAUcagGCGGCCGg -3' miRNA: 3'- -CCAa------CUUGG---CCUAGCUGa--CGCCGGUg -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 48717 | 0.68 | 0.5809 |
Target: 5'- aGGUgaaGAACCGGGacacCGGCcgcauggagugGUGGCCGCg -3' miRNA: 3'- -CCAa--CUUGGCCUa---GCUGa----------CGCCGGUG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 1331 | 0.68 | 0.5809 |
Target: 5'- uGGUUGccGGCCGGGUCG-CgguaacGCGccuGCCACg -3' miRNA: 3'- -CCAAC--UUGGCCUAGCuGa-----CGC---CGGUG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 6360 | 0.68 | 0.591891 |
Target: 5'- ---gGcGCCGGGUUGGCcGCGGUgGCg -3' miRNA: 3'- ccaaCuUGGCCUAGCUGaCGCCGgUG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 9166 | 0.68 | 0.591891 |
Target: 5'- gGGUgcacGGGCCGG-UCGugUGCGaGCUg- -3' miRNA: 3'- -CCAa---CUUGGCCuAGCugACGC-CGGug -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 18585 | 0.68 | 0.602917 |
Target: 5'- cGGgaacaccGCCGGGUCGAaaGCGGUCGg -3' miRNA: 3'- -CCaacu---UGGCCUAGCUgaCGCCGGUg -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 24650 | 0.68 | 0.602917 |
Target: 5'- gGGUUGGucGCC-GAUCGA--GCGGCuCACg -3' miRNA: 3'- -CCAACU--UGGcCUAGCUgaCGCCG-GUG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 35958 | 0.68 | 0.609546 |
Target: 5'- --aUGAGCgGGGUUGACUuccugucggacccCGGCCGCa -3' miRNA: 3'- ccaACUUGgCCUAGCUGAc------------GCCGGUG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 41026 | 0.68 | 0.613969 |
Target: 5'- ---aGAGCCG--UCGACgacgGCGGCCGg -3' miRNA: 3'- ccaaCUUGGCcuAGCUGa---CGCCGGUg -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 7744 | 0.67 | 0.625036 |
Target: 5'- ---aGGACCGGcUCGACgGCacGCCGCu -3' miRNA: 3'- ccaaCUUGGCCuAGCUGaCGc-CGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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