miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26267 3' -54.9 NC_005345.2 + 41165 1.12 0.000633
Target:  5'- cGGUUGAACCGGAUCGACUGCGGCCACu -3'
miRNA:   3'- -CCAACUUGGCCUAGCUGACGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 19261 0.77 0.185377
Target:  5'- ---aGGACCGGGaugcCGACgGCGGCCGCg -3'
miRNA:   3'- ccaaCUUGGCCUa---GCUGaCGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 34032 0.75 0.22961
Target:  5'- gGGgccgGAccguCCGGAUCGACggcgagaucaGCGGCCGCg -3'
miRNA:   3'- -CCaa--CUu---GGCCUAGCUGa---------CGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 45571 0.74 0.289674
Target:  5'- gGGgcGGGCCGGuugCGGCcgGgGGCCGCg -3'
miRNA:   3'- -CCaaCUUGGCCua-GCUGa-CgCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 21779 0.74 0.300055
Target:  5'- cGGgcGAGCCGGGgucggguggacugauUCGAUggcgGCGGCCGa -3'
miRNA:   3'- -CCaaCUUGGCCU---------------AGCUGa---CGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 37040 0.73 0.304592
Target:  5'- cGGgcGAGCCGGGaucCGGCcgGCGGCgACg -3'
miRNA:   3'- -CCaaCUUGGCCUa--GCUGa-CGCCGgUG- -5'
26267 3' -54.9 NC_005345.2 + 36769 0.73 0.304592
Target:  5'- cGUUG-ACCGGGUCGGCgucgGCGaucggcacaGCCGCa -3'
miRNA:   3'- cCAACuUGGCCUAGCUGa---CGC---------CGGUG- -5'
26267 3' -54.9 NC_005345.2 + 951 0.73 0.30995
Target:  5'- gGGUUGAACgGGAuacgccggccguccUUGACgGCGGCC-Cg -3'
miRNA:   3'- -CCAACUUGgCCU--------------AGCUGaCGCCGGuG- -5'
26267 3' -54.9 NC_005345.2 + 25664 0.72 0.387893
Target:  5'- cGGacGAGCCGaaguGAUCGGcCUGCGGCgACu -3'
miRNA:   3'- -CCaaCUUGGC----CUAGCU-GACGCCGgUG- -5'
26267 3' -54.9 NC_005345.2 + 27036 0.71 0.415641
Target:  5'- gGGUcGuGCCGG-UCG-UUGUGGCCACg -3'
miRNA:   3'- -CCAaCuUGGCCuAGCuGACGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 20503 0.71 0.424199
Target:  5'- cGGUcgGGGCUuuccgcugccccgGGAUCGGcCUGCGGCgACa -3'
miRNA:   3'- -CCAa-CUUGG-------------CCUAGCU-GACGCCGgUG- -5'
26267 3' -54.9 NC_005345.2 + 43513 0.71 0.425156
Target:  5'- cGGUgccGAUCGGGUCGGCgaucaccgcGuCGGCCACg -3'
miRNA:   3'- -CCAac-UUGGCCUAGCUGa--------C-GCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 36902 0.71 0.425156
Target:  5'- ---cGAGCCGGGccugcucgcUCGACUcGCGGUCAg -3'
miRNA:   3'- ccaaCUUGGCCU---------AGCUGA-CGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 29938 0.71 0.425156
Target:  5'- gGGgaGGACCGGcUCGACgucGgGGCCGu -3'
miRNA:   3'- -CCaaCUUGGCCuAGCUGa--CgCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 7453 0.7 0.454463
Target:  5'- ---aGGACCGGAUCguGACcGCGGCaGCg -3'
miRNA:   3'- ccaaCUUGGCCUAG--CUGaCGCCGgUG- -5'
26267 3' -54.9 NC_005345.2 + 34760 0.7 0.454463
Target:  5'- --gUGcAGCCGGAUCGGCacCGGCCGg -3'
miRNA:   3'- ccaAC-UUGGCCUAGCUGacGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 34994 0.7 0.454463
Target:  5'- aGGUacucgGcGCCGGggCGcuGCgGCGGCCACg -3'
miRNA:   3'- -CCAa----CuUGGCCuaGC--UGaCGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 14909 0.7 0.464473
Target:  5'- cGGgcGAAgCGGGccgCGGCgcgGCGGCUGCa -3'
miRNA:   3'- -CCaaCUUgGCCUa--GCUGa--CGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 40756 0.7 0.464473
Target:  5'- gGGgcGGACCGu-UCGGCcGcCGGCCGCg -3'
miRNA:   3'- -CCaaCUUGGCcuAGCUGaC-GCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 31268 0.7 0.464473
Target:  5'- gGGUgcgcgGGugCGGGggCGGgUGCGcGCCACg -3'
miRNA:   3'- -CCAa----CUugGCCUa-GCUgACGC-CGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.