Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26267 | 3' | -54.9 | NC_005345.2 | + | 21779 | 0.74 | 0.300055 |
Target: 5'- cGGgcGAGCCGGGgucggguggacugauUCGAUggcgGCGGCCGa -3' miRNA: 3'- -CCaaCUUGGCCU---------------AGCUGa---CGCCGGUg -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 43361 | 0.67 | 0.635002 |
Target: 5'- aGGggGuGCCGG-UCGACgcguacgccgaccUGCGGaCCGCc -3' miRNA: 3'- -CCaaCuUGGCCuAGCUG-------------ACGCC-GGUG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 7361 | 0.67 | 0.63611 |
Target: 5'- cGGUggcGcAGCCGGG-CGGggGUGGCCGCu -3' miRNA: 3'- -CCAa--C-UUGGCCUaGCUgaCGCCGGUG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 44438 | 0.66 | 0.734322 |
Target: 5'- cGGUUGGcACCGuGAUCGccgccCUGUucGCCGCa -3' miRNA: 3'- -CCAACU-UGGC-CUAGCu----GACGc-CGGUG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 20503 | 0.71 | 0.424199 |
Target: 5'- cGGUcgGGGCUuuccgcugccccgGGAUCGGcCUGCGGCgACa -3' miRNA: 3'- -CCAa-CUUGG-------------CCUAGCU-GACGCCGgUG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 7453 | 0.7 | 0.454463 |
Target: 5'- ---aGGACCGGAUCguGACcGCGGCaGCg -3' miRNA: 3'- ccaaCUUGGCCUAG--CUGaCGCCGgUG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 40756 | 0.7 | 0.464473 |
Target: 5'- gGGgcGGACCGu-UCGGCcGcCGGCCGCg -3' miRNA: 3'- -CCaaCUUGGCcuAGCUGaC-GCCGGUG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 2641 | 0.7 | 0.495166 |
Target: 5'- cGGacuGACCGGGUCaaaGCUcgcaGCGGCCACg -3' miRNA: 3'- -CCaacUUGGCCUAGc--UGA----CGCCGGUG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 9166 | 0.68 | 0.591891 |
Target: 5'- gGGUgcacGGGCCGG-UCGugUGCGaGCUg- -3' miRNA: 3'- -CCAa---CUUGGCCuAGCugACGC-CGGug -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 14598 | 0.67 | 0.625036 |
Target: 5'- aGGcgGAGcggcuCCGGAUCGACggGUacgcccgcgaGGCCGCg -3' miRNA: 3'- -CCaaCUU-----GGCCUAGCUGa-CG----------CCGGUG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 18585 | 0.68 | 0.602917 |
Target: 5'- cGGgaacaccGCCGGGUCGAaaGCGGUCGg -3' miRNA: 3'- -CCaacu---UGGCCUAGCUgaCGCCGGUg -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 1331 | 0.68 | 0.5809 |
Target: 5'- uGGUUGccGGCCGGGUCG-CgguaacGCGccuGCCACg -3' miRNA: 3'- -CCAAC--UUGGCCUAGCuGa-----CGC---CGGUG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 36769 | 0.73 | 0.304592 |
Target: 5'- cGUUG-ACCGGGUCGGCgucgGCGaucggcacaGCCGCa -3' miRNA: 3'- cCAACuUGGCCUAGCUGa---CGC---------CGGUG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 35958 | 0.68 | 0.609546 |
Target: 5'- --aUGAGCgGGGUUGACUuccugucggacccCGGCCGCa -3' miRNA: 3'- ccaACUUGgCCUAGCUGAc------------GCCGGUG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 951 | 0.73 | 0.30995 |
Target: 5'- gGGUUGAACgGGAuacgccggccguccUUGACgGCGGCC-Cg -3' miRNA: 3'- -CCAACUUGgCCU--------------AGCUGaCGCCGGuG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 36258 | 0.7 | 0.495166 |
Target: 5'- cGGaUGAACCaGGAgagCGGCggcaaccCGGCCGCg -3' miRNA: 3'- -CCaACUUGG-CCUa--GCUGac-----GCCGGUG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 7744 | 0.67 | 0.625036 |
Target: 5'- ---aGGACCGGcUCGACgGCacGCCGCu -3' miRNA: 3'- ccaaCUUGGCCuAGCUGaCGc-CGGUG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 505 | 0.67 | 0.63611 |
Target: 5'- aGUUGuGCCGGGUCaGGacgccgccCUGUGGgCCGCg -3' miRNA: 3'- cCAACuUGGCCUAG-CU--------GACGCC-GGUG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 27036 | 0.71 | 0.415641 |
Target: 5'- gGGUcGuGCCGG-UCG-UUGUGGCCACg -3' miRNA: 3'- -CCAaCuUGGCCuAGCuGACGCCGGUG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 14909 | 0.7 | 0.464473 |
Target: 5'- cGGgcGAAgCGGGccgCGGCgcgGCGGCUGCa -3' miRNA: 3'- -CCaaCUUgGCCUa--GCUGa--CGCCGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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