miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26267 3' -54.9 NC_005345.2 + 34994 0.7 0.454463
Target:  5'- aGGUacucgGcGCCGGggCGcuGCgGCGGCCACg -3'
miRNA:   3'- -CCAa----CuUGGCCuaGC--UGaCGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 12669 0.68 0.568859
Target:  5'- cGUUGGcguacccGCCGGGUCGGUUGUaGGCCGa -3'
miRNA:   3'- cCAACU-------UGGCCUAGCUGACG-CCGGUg -5'
26267 3' -54.9 NC_005345.2 + 30237 0.69 0.560141
Target:  5'- cGG-UGAGCCGG-UCGACgacggugcggguccgGCcGGUCACa -3'
miRNA:   3'- -CCaACUUGGCCuAGCUGa--------------CG-CCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 33959 0.69 0.559054
Target:  5'- cGGaUGAcUCGGAUCGAgggUGgGGCCAUg -3'
miRNA:   3'- -CCaACUuGGCCUAGCUg--ACgCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 20283 0.69 0.541745
Target:  5'- ---cGAACCGGAUCGuGCcgGCgacgucggucuuaccGGCCGCg -3'
miRNA:   3'- ccaaCUUGGCCUAGC-UGa-CG---------------CCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 28207 0.69 0.537445
Target:  5'- aGUUGGGCaGGGggaACUGCGGCCAa -3'
miRNA:   3'- cCAACUUGgCCUagcUGACGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 31952 0.69 0.505602
Target:  5'- gGGUgcgGGugCGGGUgCGGgUGCGGCUg- -3'
miRNA:   3'- -CCAa--CUugGCCUA-GCUgACGCCGGug -5'
26267 3' -54.9 NC_005345.2 + 19412 0.7 0.474596
Target:  5'- ---cGAGCUcGGUCGGCUGCG-CCGCg -3'
miRNA:   3'- ccaaCUUGGcCUAGCUGACGCcGGUG- -5'
26267 3' -54.9 NC_005345.2 + 31268 0.7 0.464473
Target:  5'- gGGUgcgcgGGugCGGGggCGGgUGCGcGCCACg -3'
miRNA:   3'- -CCAa----CUugGCCUa-GCUgACGC-CGGUG- -5'
26267 3' -54.9 NC_005345.2 + 46046 0.68 0.569951
Target:  5'- cGGUauguccgGGGCCcgaGGGUCGAUcagGCGGCCGg -3'
miRNA:   3'- -CCAa------CUUGG---CCUAGCUGa--CGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 30877 0.68 0.569951
Target:  5'- gGGUgcuccgGGugCGGG-CGACggcGCGGCCGg -3'
miRNA:   3'- -CCAa-----CUugGCCUaGCUGa--CGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 48717 0.68 0.5809
Target:  5'- aGGUgaaGAACCGGGacacCGGCcgcauggagugGUGGCCGCg -3'
miRNA:   3'- -CCAa--CUUGGCCUa---GCUGa----------CGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 41220 0.66 0.702105
Target:  5'- ---cGAuCCGGuaagCGAUccgUGCGGCCAUg -3'
miRNA:   3'- ccaaCUuGGCCua--GCUG---ACGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 21791 0.66 0.702105
Target:  5'- ---cGAGCCGGAcagcCGACgGCGGaaguaCCGCg -3'
miRNA:   3'- ccaaCUUGGCCUa---GCUGaCGCC-----GGUG- -5'
26267 3' -54.9 NC_005345.2 + 19300 0.66 0.702105
Target:  5'- ---cGGACCGGGuccuUCGuCUuccacGUGGCCGCg -3'
miRNA:   3'- ccaaCUUGGCCU----AGCuGA-----CGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 33501 0.67 0.680263
Target:  5'- ---cGGGCCcGGUCGcAUUGCGGCCcCg -3'
miRNA:   3'- ccaaCUUGGcCUAGC-UGACGCCGGuG- -5'
26267 3' -54.9 NC_005345.2 + 37695 0.67 0.669267
Target:  5'- cGGccgUGGGCCgccaguccugcgGGAUCGcGCUGCGGCgCGg -3'
miRNA:   3'- -CCa--ACUUGG------------CCUAGC-UGACGCCG-GUg -5'
26267 3' -54.9 NC_005345.2 + 8379 0.67 0.669267
Target:  5'- aGGUgugGAACCG---CGGCcgGCGGCCGa -3'
miRNA:   3'- -CCAa--CUUGGCcuaGCUGa-CGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 41026 0.68 0.613969
Target:  5'- ---aGAGCCG--UCGACgacgGCGGCCGg -3'
miRNA:   3'- ccaaCUUGGCcuAGCUGa---CGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 6360 0.68 0.591891
Target:  5'- ---gGcGCCGGGUUGGCcGCGGUgGCg -3'
miRNA:   3'- ccaaCuUGGCCUAGCUGaCGCCGgUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.