miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26267 3' -54.9 NC_005345.2 + 505 0.67 0.63611
Target:  5'- aGUUGuGCCGGGUCaGGacgccgccCUGUGGgCCGCg -3'
miRNA:   3'- cCAACuUGGCCUAG-CU--------GACGCC-GGUG- -5'
26267 3' -54.9 NC_005345.2 + 951 0.73 0.30995
Target:  5'- gGGUUGAACgGGAuacgccggccguccUUGACgGCGGCC-Cg -3'
miRNA:   3'- -CCAACUUGgCCU--------------AGCUGaCGCCGGuG- -5'
26267 3' -54.9 NC_005345.2 + 1331 0.68 0.5809
Target:  5'- uGGUUGccGGCCGGGUCG-CgguaacGCGccuGCCACg -3'
miRNA:   3'- -CCAAC--UUGGCCUAGCuGa-----CGC---CGGUG- -5'
26267 3' -54.9 NC_005345.2 + 2641 0.7 0.495166
Target:  5'- cGGacuGACCGGGUCaaaGCUcgcaGCGGCCACg -3'
miRNA:   3'- -CCaacUUGGCCUAGc--UGA----CGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 4233 0.66 0.734322
Target:  5'- ---cGAGCCGauGGUCGccGCUGCggagcgggacgaGGCCACg -3'
miRNA:   3'- ccaaCUUGGC--CUAGC--UGACG------------CCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 6360 0.68 0.591891
Target:  5'- ---gGcGCCGGGUUGGCcGCGGUgGCg -3'
miRNA:   3'- ccaaCuUGGCCUAGCUGaCGCCGgUG- -5'
26267 3' -54.9 NC_005345.2 + 6834 0.67 0.669267
Target:  5'- ---cGGGCgGGAUCGACaugguccucGCGGCgACg -3'
miRNA:   3'- ccaaCUUGgCCUAGCUGa--------CGCCGgUG- -5'
26267 3' -54.9 NC_005345.2 + 7034 0.66 0.734322
Target:  5'- cGGUcGAccgGCCGGcgAUCGAg-GCGGCC-Cg -3'
miRNA:   3'- -CCAaCU---UGGCC--UAGCUgaCGCCGGuG- -5'
26267 3' -54.9 NC_005345.2 + 7361 0.67 0.63611
Target:  5'- cGGUggcGcAGCCGGG-CGGggGUGGCCGCu -3'
miRNA:   3'- -CCAa--C-UUGGCCUaGCUgaCGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 7453 0.7 0.454463
Target:  5'- ---aGGACCGGAUCguGACcGCGGCaGCg -3'
miRNA:   3'- ccaaCUUGGCCUAG--CUGaCGCCGgUG- -5'
26267 3' -54.9 NC_005345.2 + 7744 0.67 0.625036
Target:  5'- ---aGGACCGGcUCGACgGCacGCCGCu -3'
miRNA:   3'- ccaaCUUGGCCuAGCUGaCGc-CGGUG- -5'
26267 3' -54.9 NC_005345.2 + 8379 0.67 0.669267
Target:  5'- aGGUgugGAACCG---CGGCcgGCGGCCGa -3'
miRNA:   3'- -CCAa--CUUGGCcuaGCUGa-CGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 9166 0.68 0.591891
Target:  5'- gGGUgcacGGGCCGG-UCGugUGCGaGCUg- -3'
miRNA:   3'- -CCAa---CUUGGCCuAGCugACGC-CGGug -5'
26267 3' -54.9 NC_005345.2 + 10399 0.66 0.712929
Target:  5'- cGGcgUGAGCCGGG-CGAggGUcGCCACc -3'
miRNA:   3'- -CCa-ACUUGGCCUaGCUgaCGcCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 10806 0.67 0.657131
Target:  5'- ---cGGACCGGcUCGAuuggugcCUGCGGCagaCACg -3'
miRNA:   3'- ccaaCUUGGCCuAGCU-------GACGCCG---GUG- -5'
26267 3' -54.9 NC_005345.2 + 12669 0.68 0.568859
Target:  5'- cGUUGGcguacccGCCGGGUCGGUUGUaGGCCGa -3'
miRNA:   3'- cCAACU-------UGGCCUAGCUGACG-CCGGUg -5'
26267 3' -54.9 NC_005345.2 + 13633 0.66 0.723671
Target:  5'- ---gGAACCGGA-CGGC-GCGGCgugaGCg -3'
miRNA:   3'- ccaaCUUGGCCUaGCUGaCGCCGg---UG- -5'
26267 3' -54.9 NC_005345.2 + 14598 0.67 0.625036
Target:  5'- aGGcgGAGcggcuCCGGAUCGACggGUacgcccgcgaGGCCGCg -3'
miRNA:   3'- -CCaaCUU-----GGCCUAGCUGa-CG----------CCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 14909 0.7 0.464473
Target:  5'- cGGgcGAAgCGGGccgCGGCgcgGCGGCUGCa -3'
miRNA:   3'- -CCaaCUUgGCCUa--GCUGa--CGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 16112 0.67 0.64718
Target:  5'- cGUcGAGCCGGAcCGcACcccGCGGCCGa -3'
miRNA:   3'- cCAaCUUGGCCUaGC-UGa--CGCCGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.