miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26267 3' -54.9 NC_005345.2 + 48717 0.68 0.5809
Target:  5'- aGGUgaaGAACCGGGacacCGGCcgcauggagugGUGGCCGCg -3'
miRNA:   3'- -CCAa--CUUGGCCUa---GCUGa----------CGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 46046 0.68 0.569951
Target:  5'- cGGUauguccgGGGCCcgaGGGUCGAUcagGCGGCCGg -3'
miRNA:   3'- -CCAa------CUUGG---CCUAGCUGa--CGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 45571 0.74 0.289674
Target:  5'- gGGgcGGGCCGGuugCGGCcgGgGGCCGCg -3'
miRNA:   3'- -CCaaCUUGGCCua-GCUGa-CgCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 44438 0.66 0.734322
Target:  5'- cGGUUGGcACCGuGAUCGccgccCUGUucGCCGCa -3'
miRNA:   3'- -CCAACU-UGGC-CUAGCu----GACGc-CGGUG- -5'
26267 3' -54.9 NC_005345.2 + 43513 0.71 0.425156
Target:  5'- cGGUgccGAUCGGGUCGGCgaucaccgcGuCGGCCACg -3'
miRNA:   3'- -CCAac-UUGGCCUAGCUGa--------C-GCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 43361 0.67 0.635002
Target:  5'- aGGggGuGCCGG-UCGACgcguacgccgaccUGCGGaCCGCc -3'
miRNA:   3'- -CCaaCuUGGCCuAGCUG-------------ACGCC-GGUG- -5'
26267 3' -54.9 NC_005345.2 + 41531 0.67 0.665961
Target:  5'- --cUGGGCCGGGUCGGCgaugugcuccgacacCGGCCuCg -3'
miRNA:   3'- ccaACUUGGCCUAGCUGac-------------GCCGGuG- -5'
26267 3' -54.9 NC_005345.2 + 41220 0.66 0.702105
Target:  5'- ---cGAuCCGGuaagCGAUccgUGCGGCCAUg -3'
miRNA:   3'- ccaaCUuGGCCua--GCUG---ACGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 41165 1.12 0.000633
Target:  5'- cGGUUGAACCGGAUCGACUGCGGCCACu -3'
miRNA:   3'- -CCAACUUGGCCUAGCUGACGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 41026 0.68 0.613969
Target:  5'- ---aGAGCCG--UCGACgacgGCGGCCGg -3'
miRNA:   3'- ccaaCUUGGCcuAGCUGa---CGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 40756 0.7 0.464473
Target:  5'- gGGgcGGACCGu-UCGGCcGcCGGCCGCg -3'
miRNA:   3'- -CCaaCUUGGCcuAGCUGaC-GCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 37695 0.67 0.669267
Target:  5'- cGGccgUGGGCCgccaguccugcgGGAUCGcGCUGCGGCgCGg -3'
miRNA:   3'- -CCa--ACUUGG------------CCUAGC-UGACGCCG-GUg -5'
26267 3' -54.9 NC_005345.2 + 37040 0.73 0.304592
Target:  5'- cGGgcGAGCCGGGaucCGGCcgGCGGCgACg -3'
miRNA:   3'- -CCaaCUUGGCCUa--GCUGa-CGCCGgUG- -5'
26267 3' -54.9 NC_005345.2 + 36945 0.67 0.669267
Target:  5'- aGGcgGcGGCCGGAcagCGGCaGaCGGCCGCu -3'
miRNA:   3'- -CCaaC-UUGGCCUa--GCUGaC-GCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 36902 0.71 0.425156
Target:  5'- ---cGAGCCGGGccugcucgcUCGACUcGCGGUCAg -3'
miRNA:   3'- ccaaCUUGGCCU---------AGCUGA-CGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 36769 0.73 0.304592
Target:  5'- cGUUG-ACCGGGUCGGCgucgGCGaucggcacaGCCGCa -3'
miRNA:   3'- cCAACuUGGCCUAGCUGa---CGC---------CGGUG- -5'
26267 3' -54.9 NC_005345.2 + 36258 0.7 0.495166
Target:  5'- cGGaUGAACCaGGAgagCGGCggcaaccCGGCCGCg -3'
miRNA:   3'- -CCaACUUGG-CCUa--GCUGac-----GCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 35958 0.68 0.609546
Target:  5'- --aUGAGCgGGGUUGACUuccugucggacccCGGCCGCa -3'
miRNA:   3'- ccaACUUGgCCUAGCUGAc------------GCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 34994 0.7 0.454463
Target:  5'- aGGUacucgGcGCCGGggCGcuGCgGCGGCCACg -3'
miRNA:   3'- -CCAa----CuUGGCCuaGC--UGaCGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 34760 0.7 0.454463
Target:  5'- --gUGcAGCCGGAUCGGCacCGGCCGg -3'
miRNA:   3'- ccaAC-UUGGCCUAGCUGacGCCGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.