miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26267 3' -54.9 NC_005345.2 + 7361 0.67 0.63611
Target:  5'- cGGUggcGcAGCCGGG-CGGggGUGGCCGCu -3'
miRNA:   3'- -CCAa--C-UUGGCCUaGCUgaCGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 505 0.67 0.63611
Target:  5'- aGUUGuGCCGGGUCaGGacgccgccCUGUGGgCCGCg -3'
miRNA:   3'- cCAACuUGGCCUAG-CU--------GACGCC-GGUG- -5'
26267 3' -54.9 NC_005345.2 + 43361 0.67 0.635002
Target:  5'- aGGggGuGCCGG-UCGACgcguacgccgaccUGCGGaCCGCc -3'
miRNA:   3'- -CCaaCuUGGCCuAGCUG-------------ACGCC-GGUG- -5'
26267 3' -54.9 NC_005345.2 + 7744 0.67 0.625036
Target:  5'- ---aGGACCGGcUCGACgGCacGCCGCu -3'
miRNA:   3'- ccaaCUUGGCCuAGCUGaCGc-CGGUG- -5'
26267 3' -54.9 NC_005345.2 + 14598 0.67 0.625036
Target:  5'- aGGcgGAGcggcuCCGGAUCGACggGUacgcccgcgaGGCCGCg -3'
miRNA:   3'- -CCaaCUU-----GGCCUAGCUGa-CG----------CCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 41026 0.68 0.613969
Target:  5'- ---aGAGCCG--UCGACgacgGCGGCCGg -3'
miRNA:   3'- ccaaCUUGGCcuAGCUGa---CGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 35958 0.68 0.609546
Target:  5'- --aUGAGCgGGGUUGACUuccugucggacccCGGCCGCa -3'
miRNA:   3'- ccaACUUGgCCUAGCUGAc------------GCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 24650 0.68 0.602917
Target:  5'- gGGUUGGucGCC-GAUCGA--GCGGCuCACg -3'
miRNA:   3'- -CCAACU--UGGcCUAGCUgaCGCCG-GUG- -5'
26267 3' -54.9 NC_005345.2 + 18585 0.68 0.602917
Target:  5'- cGGgaacaccGCCGGGUCGAaaGCGGUCGg -3'
miRNA:   3'- -CCaacu---UGGCCUAGCUgaCGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 9166 0.68 0.591891
Target:  5'- gGGUgcacGGGCCGG-UCGugUGCGaGCUg- -3'
miRNA:   3'- -CCAa---CUUGGCCuAGCugACGC-CGGug -5'
26267 3' -54.9 NC_005345.2 + 6360 0.68 0.591891
Target:  5'- ---gGcGCCGGGUUGGCcGCGGUgGCg -3'
miRNA:   3'- ccaaCuUGGCCUAGCUGaCGCCGgUG- -5'
26267 3' -54.9 NC_005345.2 + 48717 0.68 0.5809
Target:  5'- aGGUgaaGAACCGGGacacCGGCcgcauggagugGUGGCCGCg -3'
miRNA:   3'- -CCAa--CUUGGCCUa---GCUGa----------CGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 1331 0.68 0.5809
Target:  5'- uGGUUGccGGCCGGGUCG-CgguaacGCGccuGCCACg -3'
miRNA:   3'- -CCAAC--UUGGCCUAGCuGa-----CGC---CGGUG- -5'
26267 3' -54.9 NC_005345.2 + 30877 0.68 0.569951
Target:  5'- gGGUgcuccgGGugCGGG-CGACggcGCGGCCGg -3'
miRNA:   3'- -CCAa-----CUugGCCUaGCUGa--CGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 46046 0.68 0.569951
Target:  5'- cGGUauguccgGGGCCcgaGGGUCGAUcagGCGGCCGg -3'
miRNA:   3'- -CCAa------CUUGG---CCUAGCUGa--CGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 12669 0.68 0.568859
Target:  5'- cGUUGGcguacccGCCGGGUCGGUUGUaGGCCGa -3'
miRNA:   3'- cCAACU-------UGGCCUAGCUGACG-CCGGUg -5'
26267 3' -54.9 NC_005345.2 + 30237 0.69 0.560141
Target:  5'- cGG-UGAGCCGG-UCGACgacggugcggguccgGCcGGUCACa -3'
miRNA:   3'- -CCaACUUGGCCuAGCUGa--------------CG-CCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 33959 0.69 0.559054
Target:  5'- cGGaUGAcUCGGAUCGAgggUGgGGCCAUg -3'
miRNA:   3'- -CCaACUuGGCCUAGCUg--ACgCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 20283 0.69 0.541745
Target:  5'- ---cGAACCGGAUCGuGCcgGCgacgucggucuuaccGGCCGCg -3'
miRNA:   3'- ccaaCUUGGCCUAGC-UGa-CG---------------CCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 28207 0.69 0.537445
Target:  5'- aGUUGGGCaGGGggaACUGCGGCCAa -3'
miRNA:   3'- cCAACUUGgCCUagcUGACGCCGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.