Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26268 | 5' | -58.3 | NC_005345.2 | + | 34307 | 0.69 | 0.314966 |
Target: 5'- aAGCAGUCGCaGCUcGCcgUCGCCCUguuCGGCa -3' miRNA: 3'- -UCGUCAGUGcUGA-CG--AGUGGGG---GCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 4094 | 0.69 | 0.355283 |
Target: 5'- cGGUcgAG-CACGACggGCaCACCCCCGAg -3' miRNA: 3'- -UCG--UCaGUGCUGa-CGaGUGGGGGCUg -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 4950 | 0.69 | 0.33873 |
Target: 5'- uGGCGGUCACGgagacccacACgUGCUCGCaCUgCGACc -3' miRNA: 3'- -UCGUCAGUGC---------UG-ACGAGUG-GGgGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 39245 | 0.69 | 0.322745 |
Target: 5'- -cCGGUCAUucCUGCUCGCCgCCGAg -3' miRNA: 3'- ucGUCAGUGcuGACGAGUGGgGGCUg -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 14915 | 0.69 | 0.322745 |
Target: 5'- cGCGuUCGCGGCcgUGC-CGCCCCgGGCg -3' miRNA: 3'- uCGUcAGUGCUG--ACGaGUGGGGgCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 8461 | 0.69 | 0.346936 |
Target: 5'- cGCGGUCGCGACUcccguuucgggGUUCuCCCCgCGGa -3' miRNA: 3'- uCGUCAGUGCUGA-----------CGAGuGGGG-GCUg -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 13446 | 0.68 | 0.381161 |
Target: 5'- cGGCGcGUC-CGGCaGCUUGCCCagaCCGACg -3' miRNA: 3'- -UCGU-CAGuGCUGaCGAGUGGG---GGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 20896 | 0.68 | 0.408268 |
Target: 5'- cGCAcUCAcugcccCGAUUGacagCGCCCCCGACa -3' miRNA: 3'- uCGUcAGU------GCUGACga--GUGGGGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 20040 | 0.68 | 0.399099 |
Target: 5'- gAGCAGcCGCGGCggaugGUUCacggaGCCCUCGAa -3' miRNA: 3'- -UCGUCaGUGCUGa----CGAG-----UGGGGGCUg -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 10103 | 0.68 | 0.372397 |
Target: 5'- gAGCGGcacaugcgCgACGACUGCccCAUCCCCGAg -3' miRNA: 3'- -UCGUCa-------G-UGCUGACGa-GUGGGGGCUg -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 9503 | 0.68 | 0.372397 |
Target: 5'- uGGCAGUCGCGGgccCUGUgcgCGCagaCCGACc -3' miRNA: 3'- -UCGUCAGUGCU---GACGa--GUGgg-GGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 24936 | 0.68 | 0.408268 |
Target: 5'- gAGCAGccgcCGCGAUcgaaCUCGgCCCCGACg -3' miRNA: 3'- -UCGUCa---GUGCUGac--GAGUgGGGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 13683 | 0.68 | 0.372397 |
Target: 5'- cGCcGUCG-GGCaGCUCGCCCUCGAa -3' miRNA: 3'- uCGuCAGUgCUGaCGAGUGGGGGCUg -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 22712 | 0.68 | 0.367204 |
Target: 5'- gAGCAuGUCGCGcACgucGCUCGCgugcucuuucaggaaCCCCGACn -3' miRNA: 3'- -UCGU-CAGUGC-UGa--CGAGUG---------------GGGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 45421 | 0.67 | 0.436549 |
Target: 5'- aGGCGG-CGCGggcgaacgaucaGCUGCaccUCGCCgCCGGCg -3' miRNA: 3'- -UCGUCaGUGC------------UGACG---AGUGGgGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 29152 | 0.67 | 0.426996 |
Target: 5'- cGGCAGcC-CGcCUG-UCGCCCUCGGCg -3' miRNA: 3'- -UCGUCaGuGCuGACgAGUGGGGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 45639 | 0.67 | 0.426996 |
Target: 5'- cGCAGuucgcUCAUGACgucCUCGCCUgCGACg -3' miRNA: 3'- uCGUC-----AGUGCUGac-GAGUGGGgGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 41701 | 0.67 | 0.415698 |
Target: 5'- cGCGGUCACGAuccggucCUGCUCgacgucaACgCCCGuCg -3' miRNA: 3'- uCGUCAGUGCU-------GACGAG-------UGgGGGCuG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 2547 | 0.67 | 0.436549 |
Target: 5'- cGCGGUgGCGACgGCgagUGCCCggUCGACg -3' miRNA: 3'- uCGUCAgUGCUGaCGa--GUGGG--GGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 30365 | 0.67 | 0.426996 |
Target: 5'- cGGCGGUCGCgcagaGACuUGCUCcgcaguacacGCCgCCGGCc -3' miRNA: 3'- -UCGUCAGUG-----CUG-ACGAG----------UGGgGGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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