Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26268 | 5' | -58.3 | NC_005345.2 | + | 13683 | 0.68 | 0.372397 |
Target: 5'- cGCcGUCG-GGCaGCUCGCCCUCGAa -3' miRNA: 3'- uCGuCAGUgCUGaCGAGUGGGGGCUg -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 14339 | 0.66 | 0.486066 |
Target: 5'- gGGCAGgcgCACGGCgUGCgcgaggacCGCgaCCCGGCg -3' miRNA: 3'- -UCGUCa--GUGCUG-ACGa-------GUGg-GGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 14430 | 0.74 | 0.160181 |
Target: 5'- gGGCgaucgaGGUCGCGcuCUGCUCGCUCgCCGACu -3' miRNA: 3'- -UCG------UCAGUGCu-GACGAGUGGG-GGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 14915 | 0.69 | 0.322745 |
Target: 5'- cGCGuUCGCGGCcgUGC-CGCCCCgGGCg -3' miRNA: 3'- uCGUcAGUGCUG--ACGaGUGGGGgCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 15154 | 0.67 | 0.446223 |
Target: 5'- gGGCGGguUCACGACcacgaugggguUGCUCauggccccACCCUCGAUc -3' miRNA: 3'- -UCGUC--AGUGCUG-----------ACGAG--------UGGGGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 16548 | 0.67 | 0.455032 |
Target: 5'- uGC-GUCACaccggguGGCUGCUCACCgUCgCGACg -3' miRNA: 3'- uCGuCAGUG-------CUGACGAGUGG-GG-GCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 17647 | 0.66 | 0.475942 |
Target: 5'- cGGuCGGUCACGACcgUGUUCgcgggGCCgCCGAUc -3' miRNA: 3'- -UC-GUCAGUGCUG--ACGAG-----UGGgGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 18367 | 0.67 | 0.465924 |
Target: 5'- cGCcGUCACaGgaGUaCACCCCCGAUg -3' miRNA: 3'- uCGuCAGUGcUgaCGaGUGGGGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 18912 | 0.69 | 0.346936 |
Target: 5'- cGCAccGUCGuCGACcgGCUCACCgCCGGa -3' miRNA: 3'- uCGU--CAGU-GCUGa-CGAGUGGgGGCUg -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 20040 | 0.68 | 0.399099 |
Target: 5'- gAGCAGcCGCGGCggaugGUUCacggaGCCCUCGAa -3' miRNA: 3'- -UCGUCaGUGCUGa----CGAG-----UGGGGGCUg -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 20609 | 0.75 | 0.132168 |
Target: 5'- gAGCcgAGcCACGACUGaucgUCGCCCCCGAa -3' miRNA: 3'- -UCG--UCaGUGCUGACg---AGUGGGGGCUg -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 20896 | 0.68 | 0.408268 |
Target: 5'- cGCAcUCAcugcccCGAUUGacagCGCCCCCGACa -3' miRNA: 3'- uCGUcAGU------GCUGACga--GUGGGGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 22712 | 0.68 | 0.367204 |
Target: 5'- gAGCAuGUCGCGcACgucGCUCGCgugcucuuucaggaaCCCCGACn -3' miRNA: 3'- -UCGU-CAGUGC-UGa--CGAGUG---------------GGGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 22758 | 0.72 | 0.211681 |
Target: 5'- aGGuCGGUCGCGucgaGCUGCccgaacugcguguucUCACCCuCCGACg -3' miRNA: 3'- -UC-GUCAGUGC----UGACG---------------AGUGGG-GGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 23707 | 0.67 | 0.456016 |
Target: 5'- gAGCGGUaCGgGGCUcugcGCUCGCuUCCUGGCg -3' miRNA: 3'- -UCGUCA-GUgCUGA----CGAGUG-GGGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 24936 | 0.68 | 0.408268 |
Target: 5'- gAGCAGccgcCGCGAUcgaaCUCGgCCCCGACg -3' miRNA: 3'- -UCGUCa---GUGCUGac--GAGUgGGGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 25186 | 0.69 | 0.314196 |
Target: 5'- cGCGGcCGCGACaGCagcccgcggugaaUCACCCgCCGGCc -3' miRNA: 3'- uCGUCaGUGCUGaCG-------------AGUGGG-GGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 25681 | 0.7 | 0.285273 |
Target: 5'- cGguG-CAcCGGCUGCUCGCgCUCGGCg -3' miRNA: 3'- uCguCaGU-GCUGACGAGUGgGGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 26515 | 0.67 | 0.465924 |
Target: 5'- uGCGGaCACGAUcGg-CGCCCUCGACa -3' miRNA: 3'- uCGUCaGUGCUGaCgaGUGGGGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 27848 | 0.67 | 0.465924 |
Target: 5'- cGguGUgGcCGAUccucgGCggCGCCCCCGACg -3' miRNA: 3'- uCguCAgU-GCUGa----CGa-GUGGGGGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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