miRNA display CGI


Results 1 - 20 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26268 5' -58.3 NC_005345.2 + 1149 0.72 0.209461
Target:  5'- uGGCGGUCGUGACUGCUCGgUCC-GGCu -3'
miRNA:   3'- -UCGUCAGUGCUGACGAGUgGGGgCUG- -5'
26268 5' -58.3 NC_005345.2 + 2547 0.67 0.436549
Target:  5'- cGCGGUgGCGACgGCgagUGCCCggUCGACg -3'
miRNA:   3'- uCGUCAgUGCUGaCGa--GUGGG--GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 3537 0.74 0.155874
Target:  5'- cGGCGGUgACG-CUGUgacgaUCACCCUCGACc -3'
miRNA:   3'- -UCGUCAgUGCuGACG-----AGUGGGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 3873 0.66 0.506612
Target:  5'- cGGC-GUCccuGCG-CUGCUCuCCgCCGACg -3'
miRNA:   3'- -UCGuCAG---UGCuGACGAGuGGgGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 4094 0.69 0.355283
Target:  5'- cGGUcgAG-CACGACggGCaCACCCCCGAg -3'
miRNA:   3'- -UCG--UCaGUGCUGa-CGaGUGGGGGCUg -5'
26268 5' -58.3 NC_005345.2 + 4950 0.69 0.33873
Target:  5'- uGGCGGUCACGgagacccacACgUGCUCGCaCUgCGACc -3'
miRNA:   3'- -UCGUCAGUGC---------UG-ACGAGUG-GGgGCUG- -5'
26268 5' -58.3 NC_005345.2 + 5217 0.66 0.475942
Target:  5'- gGGCAGcUCGCGGCcgGcCUgAUCgCCGACg -3'
miRNA:   3'- -UCGUC-AGUGCUGa-C-GAgUGGgGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 6188 0.66 0.517024
Target:  5'- cGCAGUuccgcgcguucCGCGGCgcccugGC-CACCuCCCGAUa -3'
miRNA:   3'- uCGUCA-----------GUGCUGa-----CGaGUGG-GGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 8461 0.69 0.346936
Target:  5'- cGCGGUCGCGACUcccguuucgggGUUCuCCCCgCGGa -3'
miRNA:   3'- uCGUCAGUGCUGA-----------CGAGuGGGG-GCUg -5'
26268 5' -58.3 NC_005345.2 + 8634 0.75 0.132168
Target:  5'- gAGCAGUCGUGACUGCUCucuCUCCCuACc -3'
miRNA:   3'- -UCGUCAGUGCUGACGAGu--GGGGGcUG- -5'
26268 5' -58.3 NC_005345.2 + 8869 0.66 0.475942
Target:  5'- cGCGG-CAUGAC-GCUCuccggacucauGCCCgCCGGCg -3'
miRNA:   3'- uCGUCaGUGCUGaCGAG-----------UGGG-GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 8919 0.67 0.456016
Target:  5'- cGCcaGGaUCACGGCgGC-CGCCCCCGuggGCg -3'
miRNA:   3'- uCG--UC-AGUGCUGaCGaGUGGGGGC---UG- -5'
26268 5' -58.3 NC_005345.2 + 9503 0.68 0.372397
Target:  5'- uGGCAGUCGCGGgccCUGUgcgCGCagaCCGACc -3'
miRNA:   3'- -UCGUCAGUGCU---GACGa--GUGgg-GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 10103 0.68 0.372397
Target:  5'- gAGCGGcacaugcgCgACGACUGCccCAUCCCCGAg -3'
miRNA:   3'- -UCGUCa-------G-UGCUGACGa-GUGGGGGCUg -5'
26268 5' -58.3 NC_005345.2 + 11547 0.7 0.299835
Target:  5'- cGCAG-CACGACcgcgaaGUUCAUCgCCCGGCa -3'
miRNA:   3'- uCGUCaGUGCUGa-----CGAGUGG-GGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 12651 0.67 0.426996
Target:  5'- gAGCGGgcgCACuGGCUGaacugCGCCCCCacGGCa -3'
miRNA:   3'- -UCGUCa--GUG-CUGACga---GUGGGGG--CUG- -5'
26268 5' -58.3 NC_005345.2 + 13202 0.66 0.506612
Target:  5'- cGGCAGcccgCGCGGCgaGCacacccCGCgCCCCGGCg -3'
miRNA:   3'- -UCGUCa---GUGCUGa-CGa-----GUG-GGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 13272 0.69 0.322745
Target:  5'- gAGCAGcUCGuCGGCgacgaCGCCCCCGACc -3'
miRNA:   3'- -UCGUC-AGU-GCUGacga-GUGGGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 13446 0.68 0.381161
Target:  5'- cGGCGcGUC-CGGCaGCUUGCCCagaCCGACg -3'
miRNA:   3'- -UCGU-CAGuGCUGaCGAGUGGG---GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 13576 0.72 0.225434
Target:  5'- cGGCGG-CGCGACgaagaucgugugGCUCgACCCgCCGGCg -3'
miRNA:   3'- -UCGUCaGUGCUGa-----------CGAG-UGGG-GGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.