Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26268 | 5' | -58.3 | NC_005345.2 | + | 29784 | 0.77 | 0.105722 |
Target: 5'- cGCcgAGUCccucgaagACGACUacgcGCUCGCCCCCGGCg -3' miRNA: 3'- uCG--UCAG--------UGCUGA----CGAGUGGGGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 9503 | 0.68 | 0.372397 |
Target: 5'- uGGCAGUCGCGGgccCUGUgcgCGCagaCCGACc -3' miRNA: 3'- -UCGUCAGUGCU---GACGa--GUGgg-GGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 20040 | 0.68 | 0.399099 |
Target: 5'- gAGCAGcCGCGGCggaugGUUCacggaGCCCUCGAa -3' miRNA: 3'- -UCGUCaGUGCUGa----CGAG-----UGGGGGCUg -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 31836 | 0.66 | 0.52752 |
Target: 5'- cAGCuGGUCAagGACggGUUCGCCCguCCGGCc -3' miRNA: 3'- -UCG-UCAGUg-CUGa-CGAGUGGG--GGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 39277 | 0.73 | 0.190366 |
Target: 5'- cGGCGcGUCGgGACUGCucgaccgcguccugaUCACCUCUGACg -3' miRNA: 3'- -UCGU-CAGUgCUGACG---------------AGUGGGGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 1149 | 0.72 | 0.209461 |
Target: 5'- uGGCGGUCGUGACUGCUCGgUCC-GGCu -3' miRNA: 3'- -UCGUCAGUGCUGACGAGUgGGGgCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 25681 | 0.7 | 0.285273 |
Target: 5'- cGguG-CAcCGGCUGCUCGCgCUCGGCg -3' miRNA: 3'- uCguCaGU-GCUGACGAGUGgGGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 11547 | 0.7 | 0.299835 |
Target: 5'- cGCAG-CACGACcgcgaaGUUCAUCgCCCGGCa -3' miRNA: 3'- uCGUCaGUGCUGa-----CGAGUGG-GGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 13272 | 0.69 | 0.322745 |
Target: 5'- gAGCAGcUCGuCGGCgacgaCGCCCCCGACc -3' miRNA: 3'- -UCGUC-AGU-GCUGacga-GUGGGGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 10103 | 0.68 | 0.372397 |
Target: 5'- gAGCGGcacaugcgCgACGACUGCccCAUCCCCGAg -3' miRNA: 3'- -UCGUCa-------G-UGCUGACGa-GUGGGGGCUg -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 4950 | 0.69 | 0.33873 |
Target: 5'- uGGCGGUCACGgagacccacACgUGCUCGCaCUgCGACc -3' miRNA: 3'- -UCGUCAGUGC---------UG-ACGAGUG-GGgGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 40412 | 0.69 | 0.314966 |
Target: 5'- uGCAGUCGuCG-C-GCUCGCCaCCGACg -3' miRNA: 3'- uCGUCAGU-GCuGaCGAGUGGgGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 8634 | 0.75 | 0.132168 |
Target: 5'- gAGCAGUCGUGACUGCUCucuCUCCCuACc -3' miRNA: 3'- -UCGUCAGUGCUGACGAGu--GGGGGcUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 18912 | 0.69 | 0.346936 |
Target: 5'- cGCAccGUCGuCGACcgGCUCACCgCCGGa -3' miRNA: 3'- uCGU--CAGU-GCUGa-CGAGUGGgGGCUg -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 3537 | 0.74 | 0.155874 |
Target: 5'- cGGCGGUgACG-CUGUgacgaUCACCCUCGACc -3' miRNA: 3'- -UCGUCAgUGCuGACG-----AGUGGGGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 34307 | 0.69 | 0.314966 |
Target: 5'- aAGCAGUCGCaGCUcGCcgUCGCCCUguuCGGCa -3' miRNA: 3'- -UCGUCAGUGcUGA-CG--AGUGGGG---GCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 4094 | 0.69 | 0.355283 |
Target: 5'- cGGUcgAG-CACGACggGCaCACCCCCGAg -3' miRNA: 3'- -UCG--UCaGUGCUGa-CGaGUGGGGGCUg -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 13683 | 0.68 | 0.372397 |
Target: 5'- cGCcGUCG-GGCaGCUCGCCCUCGAa -3' miRNA: 3'- uCGuCAGUgCUGaCGAGUGGGGGCUg -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 14430 | 0.74 | 0.160181 |
Target: 5'- gGGCgaucgaGGUCGCGcuCUGCUCGCUCgCCGACu -3' miRNA: 3'- -UCG------UCAGUGCu-GACGAGUGGG-GGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 13576 | 0.72 | 0.225434 |
Target: 5'- cGGCGG-CGCGACgaagaucgugugGCUCgACCCgCCGGCg -3' miRNA: 3'- -UCGUCaGUGCUGa-----------CGAG-UGGG-GGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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