miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26268 5' -58.3 NC_005345.2 + 20609 0.75 0.132168
Target:  5'- gAGCcgAGcCACGACUGaucgUCGCCCCCGAa -3'
miRNA:   3'- -UCG--UCaGUGCUGACg---AGUGGGGGCUg -5'
26268 5' -58.3 NC_005345.2 + 8461 0.69 0.346936
Target:  5'- cGCGGUCGCGACUcccguuucgggGUUCuCCCCgCGGa -3'
miRNA:   3'- uCGUCAGUGCUGA-----------CGAGuGGGG-GCUg -5'
26268 5' -58.3 NC_005345.2 + 14915 0.69 0.322745
Target:  5'- cGCGuUCGCGGCcgUGC-CGCCCCgGGCg -3'
miRNA:   3'- uCGUcAGUGCUG--ACGaGUGGGGgCUG- -5'
26268 5' -58.3 NC_005345.2 + 39245 0.69 0.322745
Target:  5'- -cCGGUCAUucCUGCUCGCCgCCGAg -3'
miRNA:   3'- ucGUCAGUGcuGACGAGUGGgGGCUg -5'
26268 5' -58.3 NC_005345.2 + 25186 0.69 0.314196
Target:  5'- cGCGGcCGCGACaGCagcccgcggugaaUCACCCgCCGGCc -3'
miRNA:   3'- uCGUCaGUGCUGaCG-------------AGUGGG-GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 38518 0.7 0.307329
Target:  5'- --gAGUCACGcguGCUGCUCgACCCgggCCGACc -3'
miRNA:   3'- ucgUCAGUGC---UGACGAG-UGGG---GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 37808 0.71 0.257176
Target:  5'- uGGCGGugccgcucacugcUCGCGGC-GCUCGCCUCaCGGCg -3'
miRNA:   3'- -UCGUC-------------AGUGCUGaCGAGUGGGG-GCUG- -5'
26268 5' -58.3 NC_005345.2 + 44095 0.71 0.244942
Target:  5'- cGCAG-CAC-ACcgGCUCGCCCUCGAUg -3'
miRNA:   3'- uCGUCaGUGcUGa-CGAGUGGGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 22758 0.72 0.211681
Target:  5'- aGGuCGGUCGCGucgaGCUGCccgaacugcguguucUCACCCuCCGACg -3'
miRNA:   3'- -UC-GUCAGUGC----UGACG---------------AGUGGG-GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 22712 0.68 0.367204
Target:  5'- gAGCAuGUCGCGcACgucGCUCGCgugcucuuucaggaaCCCCGACn -3'
miRNA:   3'- -UCGU-CAGUGC-UGa--CGAGUG---------------GGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 13446 0.68 0.381161
Target:  5'- cGGCGcGUC-CGGCaGCUUGCCCagaCCGACg -3'
miRNA:   3'- -UCGU-CAGuGCUGaCGAGUGGG---GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 41701 0.67 0.415698
Target:  5'- cGCGGUCACGAuccggucCUGCUCgacgucaACgCCCGuCg -3'
miRNA:   3'- uCGUCAGUGCU-------GACGAG-------UGgGGGCuG- -5'
26268 5' -58.3 NC_005345.2 + 35629 0.66 0.493213
Target:  5'- cGCGGUCccagaacacgaucgACGGgUGCUCGCCgcgccaccgcaCCGACg -3'
miRNA:   3'- uCGUCAG--------------UGCUgACGAGUGGg----------GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 17647 0.66 0.475942
Target:  5'- cGGuCGGUCACGACcgUGUUCgcgggGCCgCCGAUc -3'
miRNA:   3'- -UC-GUCAGUGCUG--ACGAG-----UGGgGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 36253 0.67 0.456016
Target:  5'- cGGCcGUCGCGGCgaucgagGCgagCgGCCaCCCGGCg -3'
miRNA:   3'- -UCGuCAGUGCUGa------CGa--G-UGG-GGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 45421 0.67 0.436549
Target:  5'- aGGCGG-CGCGggcgaacgaucaGCUGCaccUCGCCgCCGGCg -3'
miRNA:   3'- -UCGUCaGUGC------------UGACG---AGUGGgGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 2547 0.67 0.436549
Target:  5'- cGCGGUgGCGACgGCgagUGCCCggUCGACg -3'
miRNA:   3'- uCGUCAgUGCUGaCGa--GUGGG--GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 30365 0.67 0.426996
Target:  5'- cGGCGGUCGCgcagaGACuUGCUCcgcaguacacGCCgCCGGCc -3'
miRNA:   3'- -UCGUCAGUG-----CUG-ACGAG----------UGGgGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 29152 0.67 0.426996
Target:  5'- cGGCAGcC-CGcCUG-UCGCCCUCGGCg -3'
miRNA:   3'- -UCGUCaGuGCuGACgAGUGGGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 45639 0.67 0.426996
Target:  5'- cGCAGuucgcUCAUGACgucCUCGCCUgCGACg -3'
miRNA:   3'- uCGUC-----AGUGCUGac-GAGUGGGgGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.