miRNA display CGI


Results 1 - 20 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26268 5' -58.3 NC_005345.2 + 45639 0.67 0.426996
Target:  5'- cGCAGuucgcUCAUGACgucCUCGCCUgCGACg -3'
miRNA:   3'- uCGUC-----AGUGCUGac-GAGUGGGgGCUG- -5'
26268 5' -58.3 NC_005345.2 + 45421 0.67 0.436549
Target:  5'- aGGCGG-CGCGggcgaacgaucaGCUGCaccUCGCCgCCGGCg -3'
miRNA:   3'- -UCGUCaGUGC------------UGACG---AGUGGgGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 44095 0.71 0.244942
Target:  5'- cGCAG-CAC-ACcgGCUCGCCCUCGAUg -3'
miRNA:   3'- uCGUCaGUGcUGa-CGAGUGGGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 43406 0.67 0.456016
Target:  5'- cGCAGUCcuCGGCUGCg-GCCCggaacacggCCGGCc -3'
miRNA:   3'- uCGUCAGu-GCUGACGagUGGG---------GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 41701 0.67 0.415698
Target:  5'- cGCGGUCACGAuccggucCUGCUCgacgucaACgCCCGuCg -3'
miRNA:   3'- uCGUCAGUGCU-------GACGAG-------UGgGGGCuG- -5'
26268 5' -58.3 NC_005345.2 + 40696 0.67 0.465924
Target:  5'- cGGgAGUCGCGACcgcgcccgUGCUCGUCgUCGACa -3'
miRNA:   3'- -UCgUCAGUGCUG--------ACGAGUGGgGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 40522 1.08 0.000455
Target:  5'- gAGCAGUCACGACUGCUCACCCCCGACc -3'
miRNA:   3'- -UCGUCAGUGCUGACGAGUGGGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 40412 0.69 0.314966
Target:  5'- uGCAGUCGuCG-C-GCUCGCCaCCGACg -3'
miRNA:   3'- uCGUCAGU-GCuGaCGAGUGGgGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 39277 0.73 0.190366
Target:  5'- cGGCGcGUCGgGACUGCucgaccgcguccugaUCACCUCUGACg -3'
miRNA:   3'- -UCGU-CAGUgCUGACG---------------AGUGGGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 39245 0.69 0.322745
Target:  5'- -cCGGUCAUucCUGCUCGCCgCCGAg -3'
miRNA:   3'- ucGUCAGUGcuGACGAGUGGgGGCUg -5'
26268 5' -58.3 NC_005345.2 + 38518 0.7 0.307329
Target:  5'- --gAGUCACGcguGCUGCUCgACCCgggCCGACc -3'
miRNA:   3'- ucgUCAGUGC---UGACGAG-UGGG---GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 37855 0.66 0.475942
Target:  5'- cGGuCGGUCGCGGCcggcgagGCUCAggCCCgGACg -3'
miRNA:   3'- -UC-GUCAGUGCUGa------CGAGUg-GGGgCUG- -5'
26268 5' -58.3 NC_005345.2 + 37808 0.71 0.257176
Target:  5'- uGGCGGugccgcucacugcUCGCGGC-GCUCGCCUCaCGGCg -3'
miRNA:   3'- -UCGUC-------------AGUGCUGaCGAGUGGGG-GCUG- -5'
26268 5' -58.3 NC_005345.2 + 36436 0.67 0.427946
Target:  5'- uGCGGUacgcgcugucccgcUACGGCUcGCUCGCCucggccuacaaccgaCCCGGCg -3'
miRNA:   3'- uCGUCA--------------GUGCUGA-CGAGUGG---------------GGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 36253 0.67 0.456016
Target:  5'- cGGCcGUCGCGGCgaucgagGCgagCgGCCaCCCGGCg -3'
miRNA:   3'- -UCGuCAGUGCUGa------CGa--G-UGG-GGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 36042 0.66 0.495264
Target:  5'- gGGCAGUCcgggaucGCGAagaUGCUCGCgcaggUCCCGGg -3'
miRNA:   3'- -UCGUCAG-------UGCUg--ACGAGUG-----GGGGCUg -5'
26268 5' -58.3 NC_005345.2 + 35714 0.69 0.33873
Target:  5'- uGcCGGaCGCGccgaaACUGCUCGCCCgCGGCg -3'
miRNA:   3'- uC-GUCaGUGC-----UGACGAGUGGGgGCUG- -5'
26268 5' -58.3 NC_005345.2 + 35629 0.66 0.493213
Target:  5'- cGCGGUCccagaacacgaucgACGGgUGCUCGCCgcgccaccgcaCCGACg -3'
miRNA:   3'- uCGUCAG--------------UGCUgACGAGUGGg----------GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 34630 0.66 0.506612
Target:  5'- cGGCGGUCGgGGCggUGCgcuGCUCCCGGu -3'
miRNA:   3'- -UCGUCAGUgCUG--ACGag-UGGGGGCUg -5'
26268 5' -58.3 NC_005345.2 + 34307 0.69 0.314966
Target:  5'- aAGCAGUCGCaGCUcGCcgUCGCCCUguuCGGCa -3'
miRNA:   3'- -UCGUCAGUGcUGA-CG--AGUGGGG---GCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.