miRNA display CGI


Results 41 - 60 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26268 5' -58.3 NC_005345.2 + 29152 0.67 0.426996
Target:  5'- cGGCAGcC-CGcCUG-UCGCCCUCGGCg -3'
miRNA:   3'- -UCGUCaGuGCuGACgAGUGGGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 29784 0.77 0.105722
Target:  5'- cGCcgAGUCccucgaagACGACUacgcGCUCGCCCCCGGCg -3'
miRNA:   3'- uCG--UCAG--------UGCUGA----CGAGUGGGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 30365 0.67 0.426996
Target:  5'- cGGCGGUCGCgcagaGACuUGCUCcgcaguacacGCCgCCGGCc -3'
miRNA:   3'- -UCGUCAGUG-----CUG-ACGAG----------UGGgGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 31322 0.67 0.464928
Target:  5'- cGCGGUCugGAggGCggCcggacgugaccauGCCCCCGAUc -3'
miRNA:   3'- uCGUCAGugCUgaCGa-G-------------UGGGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 31836 0.66 0.52752
Target:  5'- cAGCuGGUCAagGACggGUUCGCCCguCCGGCc -3'
miRNA:   3'- -UCG-UCAGUg-CUGa-CGAGUGGG--GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 33338 0.66 0.486066
Target:  5'- cGCGGUCGCGGCguagccggcgUGC-CGCCCacaCCgGACg -3'
miRNA:   3'- uCGUCAGUGCUG----------ACGaGUGGG---GG-CUG- -5'
26268 5' -58.3 NC_005345.2 + 34099 0.66 0.475942
Target:  5'- cGGCGccCGCGACgGCgacaUCGCCgCCGACg -3'
miRNA:   3'- -UCGUcaGUGCUGaCG----AGUGGgGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 34307 0.69 0.314966
Target:  5'- aAGCAGUCGCaGCUcGCcgUCGCCCUguuCGGCa -3'
miRNA:   3'- -UCGUCAGUGcUGA-CG--AGUGGGG---GCUG- -5'
26268 5' -58.3 NC_005345.2 + 34630 0.66 0.506612
Target:  5'- cGGCGGUCGgGGCggUGCgcuGCUCCCGGu -3'
miRNA:   3'- -UCGUCAGUgCUG--ACGag-UGGGGGCUg -5'
26268 5' -58.3 NC_005345.2 + 35629 0.66 0.493213
Target:  5'- cGCGGUCccagaacacgaucgACGGgUGCUCGCCgcgccaccgcaCCGACg -3'
miRNA:   3'- uCGUCAG--------------UGCUgACGAGUGGg----------GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 35714 0.69 0.33873
Target:  5'- uGcCGGaCGCGccgaaACUGCUCGCCCgCGGCg -3'
miRNA:   3'- uC-GUCaGUGC-----UGACGAGUGGGgGCUG- -5'
26268 5' -58.3 NC_005345.2 + 36042 0.66 0.495264
Target:  5'- gGGCAGUCcgggaucGCGAagaUGCUCGCgcaggUCCCGGg -3'
miRNA:   3'- -UCGUCAG-------UGCUg--ACGAGUG-----GGGGCUg -5'
26268 5' -58.3 NC_005345.2 + 36253 0.67 0.456016
Target:  5'- cGGCcGUCGCGGCgaucgagGCgagCgGCCaCCCGGCg -3'
miRNA:   3'- -UCGuCAGUGCUGa------CGa--G-UGG-GGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 36436 0.67 0.427946
Target:  5'- uGCGGUacgcgcugucccgcUACGGCUcGCUCGCCucggccuacaaccgaCCCGGCg -3'
miRNA:   3'- uCGUCA--------------GUGCUGA-CGAGUGG---------------GGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 37808 0.71 0.257176
Target:  5'- uGGCGGugccgcucacugcUCGCGGC-GCUCGCCUCaCGGCg -3'
miRNA:   3'- -UCGUC-------------AGUGCUGaCGAGUGGGG-GCUG- -5'
26268 5' -58.3 NC_005345.2 + 37855 0.66 0.475942
Target:  5'- cGGuCGGUCGCGGCcggcgagGCUCAggCCCgGACg -3'
miRNA:   3'- -UC-GUCAGUGCUGa------CGAGUg-GGGgCUG- -5'
26268 5' -58.3 NC_005345.2 + 38518 0.7 0.307329
Target:  5'- --gAGUCACGcguGCUGCUCgACCCgggCCGACc -3'
miRNA:   3'- ucgUCAGUGC---UGACGAG-UGGG---GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 39245 0.69 0.322745
Target:  5'- -cCGGUCAUucCUGCUCGCCgCCGAg -3'
miRNA:   3'- ucGUCAGUGcuGACGAGUGGgGGCUg -5'
26268 5' -58.3 NC_005345.2 + 39277 0.73 0.190366
Target:  5'- cGGCGcGUCGgGACUGCucgaccgcguccugaUCACCUCUGACg -3'
miRNA:   3'- -UCGU-CAGUgCUGACG---------------AGUGGGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 40412 0.69 0.314966
Target:  5'- uGCAGUCGuCG-C-GCUCGCCaCCGACg -3'
miRNA:   3'- uCGUCAGU-GCuGaCGAGUGGgGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.