Results 41 - 60 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26268 | 5' | -58.3 | NC_005345.2 | + | 22712 | 0.68 | 0.367204 |
Target: 5'- gAGCAuGUCGCGcACgucGCUCGCgugcucuuucaggaaCCCCGACn -3' miRNA: 3'- -UCGU-CAGUGC-UGa--CGAGUG---------------GGGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 4094 | 0.69 | 0.355283 |
Target: 5'- cGGUcgAG-CACGACggGCaCACCCCCGAg -3' miRNA: 3'- -UCG--UCaGUGCUGa-CGaGUGGGGGCUg -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 18912 | 0.69 | 0.346936 |
Target: 5'- cGCAccGUCGuCGACcgGCUCACCgCCGGa -3' miRNA: 3'- uCGU--CAGU-GCUGa-CGAGUGGgGGCUg -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 8461 | 0.69 | 0.346936 |
Target: 5'- cGCGGUCGCGACUcccguuucgggGUUCuCCCCgCGGa -3' miRNA: 3'- uCGUCAGUGCUGA-----------CGAGuGGGG-GCUg -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 4950 | 0.69 | 0.33873 |
Target: 5'- uGGCGGUCACGgagacccacACgUGCUCGCaCUgCGACc -3' miRNA: 3'- -UCGUCAGUGC---------UG-ACGAGUG-GGgGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 35714 | 0.69 | 0.33873 |
Target: 5'- uGcCGGaCGCGccgaaACUGCUCGCCCgCGGCg -3' miRNA: 3'- uC-GUCaGUGC-----UGACGAGUGGGgGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 13272 | 0.69 | 0.322745 |
Target: 5'- gAGCAGcUCGuCGGCgacgaCGCCCCCGACc -3' miRNA: 3'- -UCGUC-AGU-GCUGacga-GUGGGGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 14915 | 0.69 | 0.322745 |
Target: 5'- cGCGuUCGCGGCcgUGC-CGCCCCgGGCg -3' miRNA: 3'- uCGUcAGUGCUG--ACGaGUGGGGgCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 39245 | 0.69 | 0.322745 |
Target: 5'- -cCGGUCAUucCUGCUCGCCgCCGAg -3' miRNA: 3'- ucGUCAGUGcuGACGAGUGGgGGCUg -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 34307 | 0.69 | 0.314966 |
Target: 5'- aAGCAGUCGCaGCUcGCcgUCGCCCUguuCGGCa -3' miRNA: 3'- -UCGUCAGUGcUGA-CG--AGUGGGG---GCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 40412 | 0.69 | 0.314966 |
Target: 5'- uGCAGUCGuCG-C-GCUCGCCaCCGACg -3' miRNA: 3'- uCGUCAGU-GCuGaCGAGUGGgGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 25186 | 0.69 | 0.314196 |
Target: 5'- cGCGGcCGCGACaGCagcccgcggugaaUCACCCgCCGGCc -3' miRNA: 3'- uCGUCaGUGCUGaCG-------------AGUGGG-GGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 38518 | 0.7 | 0.307329 |
Target: 5'- --gAGUCACGcguGCUGCUCgACCCgggCCGACc -3' miRNA: 3'- ucgUCAGUGC---UGACGAG-UGGG---GGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 11547 | 0.7 | 0.299835 |
Target: 5'- cGCAG-CACGACcgcgaaGUUCAUCgCCCGGCa -3' miRNA: 3'- uCGUCaGUGCUGa-----CGAGUGG-GGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 25681 | 0.7 | 0.285273 |
Target: 5'- cGguG-CAcCGGCUGCUCGCgCUCGGCg -3' miRNA: 3'- uCguCaGU-GCUGACGAGUGgGGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 37808 | 0.71 | 0.257176 |
Target: 5'- uGGCGGugccgcucacugcUCGCGGC-GCUCGCCUCaCGGCg -3' miRNA: 3'- -UCGUC-------------AGUGCUGaCGAGUGGGG-GCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 44095 | 0.71 | 0.244942 |
Target: 5'- cGCAG-CAC-ACcgGCUCGCCCUCGAUg -3' miRNA: 3'- uCGUCaGUGcUGa-CGAGUGGGGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 13576 | 0.72 | 0.225434 |
Target: 5'- cGGCGG-CGCGACgaagaucgugugGCUCgACCCgCCGGCg -3' miRNA: 3'- -UCGUCaGUGCUGa-----------CGAG-UGGG-GGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 22758 | 0.72 | 0.211681 |
Target: 5'- aGGuCGGUCGCGucgaGCUGCccgaacugcguguucUCACCCuCCGACg -3' miRNA: 3'- -UC-GUCAGUGC----UGACG---------------AGUGGG-GGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 1149 | 0.72 | 0.209461 |
Target: 5'- uGGCGGUCGUGACUGCUCGgUCC-GGCu -3' miRNA: 3'- -UCGUCAGUGCUGACGAGUgGGGgCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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