miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26268 5' -58.3 NC_005345.2 + 36253 0.67 0.456016
Target:  5'- cGGCcGUCGCGGCgaucgagGCgagCgGCCaCCCGGCg -3'
miRNA:   3'- -UCGuCAGUGCUGa------CGa--G-UGG-GGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 23707 0.67 0.456016
Target:  5'- gAGCGGUaCGgGGCUcugcGCUCGCuUCCUGGCg -3'
miRNA:   3'- -UCGUCA-GUgCUGA----CGAGUG-GGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 8919 0.67 0.456016
Target:  5'- cGCcaGGaUCACGGCgGC-CGCCCCCGuggGCg -3'
miRNA:   3'- uCG--UC-AGUGCUGaCGaGUGGGGGC---UG- -5'
26268 5' -58.3 NC_005345.2 + 16548 0.67 0.455032
Target:  5'- uGC-GUCACaccggguGGCUGCUCACCgUCgCGACg -3'
miRNA:   3'- uCGuCAGUG-------CUGACGAGUGG-GG-GCUG- -5'
26268 5' -58.3 NC_005345.2 + 15154 0.67 0.446223
Target:  5'- gGGCGGguUCACGACcacgaugggguUGCUCauggccccACCCUCGAUc -3'
miRNA:   3'- -UCGUC--AGUGCUG-----------ACGAG--------UGGGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 45421 0.67 0.436549
Target:  5'- aGGCGG-CGCGggcgaacgaucaGCUGCaccUCGCCgCCGGCg -3'
miRNA:   3'- -UCGUCaGUGC------------UGACG---AGUGGgGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 2547 0.67 0.436549
Target:  5'- cGCGGUgGCGACgGCgagUGCCCggUCGACg -3'
miRNA:   3'- uCGUCAgUGCUGaCGa--GUGGG--GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 36436 0.67 0.427946
Target:  5'- uGCGGUacgcgcugucccgcUACGGCUcGCUCGCCucggccuacaaccgaCCCGGCg -3'
miRNA:   3'- uCGUCA--------------GUGCUGA-CGAGUGG---------------GGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 12651 0.67 0.426996
Target:  5'- gAGCGGgcgCACuGGCUGaacugCGCCCCCacGGCa -3'
miRNA:   3'- -UCGUCa--GUG-CUGACga---GUGGGGG--CUG- -5'
26268 5' -58.3 NC_005345.2 + 30365 0.67 0.426996
Target:  5'- cGGCGGUCGCgcagaGACuUGCUCcgcaguacacGCCgCCGGCc -3'
miRNA:   3'- -UCGUCAGUG-----CUG-ACGAG----------UGGgGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 29152 0.67 0.426996
Target:  5'- cGGCAGcC-CGcCUG-UCGCCCUCGGCg -3'
miRNA:   3'- -UCGUCaGuGCuGACgAGUGGGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 45639 0.67 0.426996
Target:  5'- cGCAGuucgcUCAUGACgucCUCGCCUgCGACg -3'
miRNA:   3'- uCGUC-----AGUGCUGac-GAGUGGGgGCUG- -5'
26268 5' -58.3 NC_005345.2 + 41701 0.67 0.415698
Target:  5'- cGCGGUCACGAuccggucCUGCUCgacgucaACgCCCGuCg -3'
miRNA:   3'- uCGUCAGUGCU-------GACGAG-------UGgGGGCuG- -5'
26268 5' -58.3 NC_005345.2 + 20896 0.68 0.408268
Target:  5'- cGCAcUCAcugcccCGAUUGacagCGCCCCCGACa -3'
miRNA:   3'- uCGUcAGU------GCUGACga--GUGGGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 24936 0.68 0.408268
Target:  5'- gAGCAGccgcCGCGAUcgaaCUCGgCCCCGACg -3'
miRNA:   3'- -UCGUCa---GUGCUGac--GAGUgGGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 20040 0.68 0.399099
Target:  5'- gAGCAGcCGCGGCggaugGUUCacggaGCCCUCGAa -3'
miRNA:   3'- -UCGUCaGUGCUGa----CGAG-----UGGGGGCUg -5'
26268 5' -58.3 NC_005345.2 + 13446 0.68 0.381161
Target:  5'- cGGCGcGUC-CGGCaGCUUGCCCagaCCGACg -3'
miRNA:   3'- -UCGU-CAGuGCUGaCGAGUGGG---GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 10103 0.68 0.372397
Target:  5'- gAGCGGcacaugcgCgACGACUGCccCAUCCCCGAg -3'
miRNA:   3'- -UCGUCa-------G-UGCUGACGa-GUGGGGGCUg -5'
26268 5' -58.3 NC_005345.2 + 9503 0.68 0.372397
Target:  5'- uGGCAGUCGCGGgccCUGUgcgCGCagaCCGACc -3'
miRNA:   3'- -UCGUCAGUGCU---GACGa--GUGgg-GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 13683 0.68 0.372397
Target:  5'- cGCcGUCG-GGCaGCUCGCCCUCGAa -3'
miRNA:   3'- uCGuCAGUgCUGaCGAGUGGGGGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.