miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26269 3' -56.7 NC_005345.2 + 40012 1.09 0.000557
Target:  5'- gUCAACCCGGCCGACAUGGCGUGCUUGg -3'
miRNA:   3'- -AGUUGGGCCGGCUGUACCGCACGAAC- -5'
26269 3' -56.7 NC_005345.2 + 30814 0.79 0.087324
Target:  5'- cUCGACCCGGgCCGACGUcgcGGCGUGgCUg- -3'
miRNA:   3'- -AGUUGGGCC-GGCUGUA---CCGCAC-GAac -5'
26269 3' -56.7 NC_005345.2 + 48874 0.77 0.12275
Target:  5'- cCAGCauucgCCGGCCGACGUGGCG-GCg-- -3'
miRNA:   3'- aGUUG-----GGCCGGCUGUACCGCaCGaac -5'
26269 3' -56.7 NC_005345.2 + 7629 0.75 0.175864
Target:  5'- cCGACCCGGCCcagaACAUcgaGGCGUGCg-- -3'
miRNA:   3'- aGUUGGGCCGGc---UGUA---CCGCACGaac -5'
26269 3' -56.7 NC_005345.2 + 41073 0.75 0.180704
Target:  5'- gCAGCCCGGCCGccuGCucggcGGCGaGCUUGa -3'
miRNA:   3'- aGUUGGGCCGGC---UGua---CCGCaCGAAC- -5'
26269 3' -56.7 NC_005345.2 + 12753 0.74 0.217982
Target:  5'- aUCGccACCCGGCCgcggcaGACGUGGCGcGCgUGg -3'
miRNA:   3'- -AGU--UGGGCCGG------CUGUACCGCaCGaAC- -5'
26269 3' -56.7 NC_005345.2 + 38502 0.73 0.248485
Target:  5'- cCGACCCGGgCGAcCAUGGCGaGCc-- -3'
miRNA:   3'- aGUUGGGCCgGCU-GUACCGCaCGaac -5'
26269 3' -56.7 NC_005345.2 + 19060 0.72 0.27536
Target:  5'- -gAACCCGGCCGucuCggGGCcGUGCUc- -3'
miRNA:   3'- agUUGGGCCGGCu--GuaCCG-CACGAac -5'
26269 3' -56.7 NC_005345.2 + 47868 0.71 0.319951
Target:  5'- -gGGCCCGGCgacggUGACGUcggccGGCGUGCUg- -3'
miRNA:   3'- agUUGGGCCG-----GCUGUA-----CCGCACGAac -5'
26269 3' -56.7 NC_005345.2 + 39525 0.71 0.319951
Target:  5'- -gGACCCGGCCGAUcgagcaGGuCGUGCa-- -3'
miRNA:   3'- agUUGGGCCGGCUGua----CC-GCACGaac -5'
26269 3' -56.7 NC_005345.2 + 24517 0.71 0.319951
Target:  5'- cCAACCCGGCCcGCAcGGCGgaucgUGCa-- -3'
miRNA:   3'- aGUUGGGCCGGcUGUaCCGC-----ACGaac -5'
26269 3' -56.7 NC_005345.2 + 40337 0.7 0.344199
Target:  5'- -gAGCCCGGCCGGCgucucgucGUGGCGaGUg-- -3'
miRNA:   3'- agUUGGGCCGGCUG--------UACCGCaCGaac -5'
26269 3' -56.7 NC_005345.2 + 43848 0.7 0.35257
Target:  5'- aCuGCCCGGUCGACggGGCGUcgGCc-- -3'
miRNA:   3'- aGuUGGGCCGGCUGuaCCGCA--CGaac -5'
26269 3' -56.7 NC_005345.2 + 27131 0.7 0.369741
Target:  5'- gCGGCaCCGGCCGGCGUcgagcugcccgaGGCGcUGCg-- -3'
miRNA:   3'- aGUUG-GGCCGGCUGUA------------CCGC-ACGaac -5'
26269 3' -56.7 NC_005345.2 + 30691 0.7 0.369741
Target:  5'- aCGAUCCGGCCGGCugcgGGUGgccGCggUGa -3'
miRNA:   3'- aGUUGGGCCGGCUGua--CCGCa--CGa-AC- -5'
26269 3' -56.7 NC_005345.2 + 31641 0.7 0.387475
Target:  5'- --cGCCCGGCCGGCGaccGGCG-GCc-- -3'
miRNA:   3'- aguUGGGCCGGCUGUa--CCGCaCGaac -5'
26269 3' -56.7 NC_005345.2 + 36825 0.7 0.391089
Target:  5'- cUCAugCUGGCCGGCGgugcaggccggacccUGGCG-GCa-- -3'
miRNA:   3'- -AGUugGGCCGGCUGU---------------ACCGCaCGaac -5'
26269 3' -56.7 NC_005345.2 + 3623 0.69 0.40576
Target:  5'- aCGGCCCGcGCCG-CA-GGUGUGCc-- -3'
miRNA:   3'- aGUUGGGC-CGGCuGUaCCGCACGaac -5'
26269 3' -56.7 NC_005345.2 + 38533 0.69 0.424578
Target:  5'- cUCGACCCgGGCCGACcgGccGCGccGCUg- -3'
miRNA:   3'- -AGUUGGG-CCGGCUGuaC--CGCa-CGAac -5'
26269 3' -56.7 NC_005345.2 + 40774 0.69 0.424578
Target:  5'- -gGGCCgguCGGCCGGCGcgGGCGUGUc-- -3'
miRNA:   3'- agUUGG---GCCGGCUGUa-CCGCACGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.