miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26269 3' -56.7 NC_005345.2 + 30814 0.79 0.087324
Target:  5'- cUCGACCCGGgCCGACGUcgcGGCGUGgCUg- -3'
miRNA:   3'- -AGUUGGGCC-GGCUGUA---CCGCAC-GAac -5'
26269 3' -56.7 NC_005345.2 + 42853 0.67 0.515157
Target:  5'- -gAACCCGGCCGGgAUgaaGGCG-GCc-- -3'
miRNA:   3'- agUUGGGCCGGCUgUA---CCGCaCGaac -5'
26269 3' -56.7 NC_005345.2 + 14690 0.67 0.525728
Target:  5'- cCGGgCCGGCCGugccCGUGGUGUgGCg-- -3'
miRNA:   3'- aGUUgGGCCGGCu---GUACCGCA-CGaac -5'
26269 3' -56.7 NC_005345.2 + 1892 0.66 0.612597
Target:  5'- -aGACCCgcgaggcaGGCCGACGguuguacgGGCGUcggcuacuGCUUGu -3'
miRNA:   3'- agUUGGG--------CCGGCUGUa-------CCGCA--------CGAAC- -5'
26269 3' -56.7 NC_005345.2 + 47868 0.71 0.319951
Target:  5'- -gGGCCCGGCgacggUGACGUcggccGGCGUGCUg- -3'
miRNA:   3'- agUUGGGCCG-----GCUGUA-----CCGCACGAac -5'
26269 3' -56.7 NC_005345.2 + 27131 0.7 0.369741
Target:  5'- gCGGCaCCGGCCGGCGUcgagcugcccgaGGCGcUGCg-- -3'
miRNA:   3'- aGUUG-GGCCGGCUGUA------------CCGC-ACGaac -5'
26269 3' -56.7 NC_005345.2 + 31641 0.7 0.387475
Target:  5'- --cGCCCGGCCGGCGaccGGCG-GCc-- -3'
miRNA:   3'- aguUGGGCCGGCUGUa--CCGCaCGaac -5'
26269 3' -56.7 NC_005345.2 + 36825 0.7 0.391089
Target:  5'- cUCAugCUGGCCGGCGgugcaggccggacccUGGCG-GCa-- -3'
miRNA:   3'- -AGUugGGCCGGCUGU---------------ACCGCaCGaac -5'
26269 3' -56.7 NC_005345.2 + 2044 0.68 0.473802
Target:  5'- -gGGCCCGGCgCGGCccGGCGgGCc-- -3'
miRNA:   3'- agUUGGGCCG-GCUGuaCCGCaCGaac -5'
26269 3' -56.7 NC_005345.2 + 6939 0.67 0.515157
Target:  5'- aCuuCCCGGUCGuCAUGGUgGUGCc-- -3'
miRNA:   3'- aGuuGGGCCGGCuGUACCG-CACGaac -5'
26269 3' -56.7 NC_005345.2 + 19984 0.68 0.473802
Target:  5'- cCGACCCGGUucgccgagggCGACA-GGCGgGCUg- -3'
miRNA:   3'- aGUUGGGCCG----------GCUGUaCCGCaCGAac -5'
26269 3' -56.7 NC_005345.2 + 23856 0.69 0.434181
Target:  5'- cCAGCCCGGCCGGgAcgacGGCGaGCc-- -3'
miRNA:   3'- aGUUGGGCCGGCUgUa---CCGCaCGaac -5'
26269 3' -56.7 NC_005345.2 + 12753 0.74 0.217982
Target:  5'- aUCGccACCCGGCCgcggcaGACGUGGCGcGCgUGg -3'
miRNA:   3'- -AGU--UGGGCCGG------CUGUACCGCaCGaAC- -5'
26269 3' -56.7 NC_005345.2 + 6715 0.68 0.494282
Target:  5'- gCAG-CCGGCgGGCAcGGUGUGCa-- -3'
miRNA:   3'- aGUUgGGCCGgCUGUaCCGCACGaac -5'
26269 3' -56.7 NC_005345.2 + 38502 0.73 0.248485
Target:  5'- cCGACCCGGgCGAcCAUGGCGaGCc-- -3'
miRNA:   3'- aGUUGGGCCgGCU-GUACCGCaCGaac -5'
26269 3' -56.7 NC_005345.2 + 4546 0.69 0.434181
Target:  5'- aCGACCCGGaCGACGgcaGCGUGUa-- -3'
miRNA:   3'- aGUUGGGCCgGCUGUac-CGCACGaac -5'
26269 3' -56.7 NC_005345.2 + 23611 0.67 0.504673
Target:  5'- gCGACgCCGGCgGACcgGGCacgGCUg- -3'
miRNA:   3'- aGUUG-GGCCGgCUGuaCCGca-CGAac -5'
26269 3' -56.7 NC_005345.2 + 9325 0.67 0.522548
Target:  5'- gCGACCCGGgCGgcgaccagugcgacGCAUGGUG-GCUg- -3'
miRNA:   3'- aGUUGGGCCgGC--------------UGUACCGCaCGAac -5'
26269 3' -56.7 NC_005345.2 + 39525 0.71 0.319951
Target:  5'- -gGACCCGGCCGAUcgagcaGGuCGUGCa-- -3'
miRNA:   3'- agUUGGGCCGGCUGua----CC-GCACGaac -5'
26269 3' -56.7 NC_005345.2 + 30691 0.7 0.369741
Target:  5'- aCGAUCCGGCCGGCugcgGGUGgccGCggUGa -3'
miRNA:   3'- aGUUGGGCCGGCUGua--CCGCa--CGa-AC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.