miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26270 3' -56.1 NC_005345.2 + 11478 0.67 0.58035
Target:  5'- gACGACAUCaggGccgcGCAGgCGG-CCCGCa -3'
miRNA:   3'- -UGCUGUGGaaaC----UGUCgGCCaGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 44669 0.66 0.666938
Target:  5'- cACGGCucgucgaGCCg--GACAcggccGCCGGgccCCCGCc -3'
miRNA:   3'- -UGCUG-------UGGaaaCUGU-----CGGCCa--GGGCG- -5'
26270 3' -56.1 NC_005345.2 + 14507 0.66 0.635126
Target:  5'- cGCGACGCCgagcGGCAGCagccacGcCCCGUa -3'
miRNA:   3'- -UGCUGUGGaaa-CUGUCGgc----CaGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 12972 0.66 0.668032
Target:  5'- -gGACACCggcGACcaacgcugcacGCCGGaCCCGCc -3'
miRNA:   3'- ugCUGUGGaaaCUGu----------CGGCCaGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 21884 0.71 0.35393
Target:  5'- -gGugAUCgacaGCAGCCGGUUCCGCc -3'
miRNA:   3'- ugCugUGGaaacUGUCGGCCAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 5919 0.66 0.657083
Target:  5'- uGCGG-GCCac-GACAGCgGGUCgCCGUg -3'
miRNA:   3'- -UGCUgUGGaaaCUGUCGgCCAG-GGCG- -5'
26270 3' -56.1 NC_005345.2 + 39458 0.66 0.657083
Target:  5'- gGCGGCccgcugaucgGCCU---GCAGCCGGcggcgCUCGCg -3'
miRNA:   3'- -UGCUG----------UGGAaacUGUCGGCCa----GGGCG- -5'
26270 3' -56.1 NC_005345.2 + 30131 0.66 0.628533
Target:  5'- aGCGGC-CCgagGGCGGCgCGccacccgucgaggucGUCCCGCc -3'
miRNA:   3'- -UGCUGuGGaaaCUGUCG-GC---------------CAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 4463 0.66 0.624138
Target:  5'- cCGGCggggGCCc--GGCGGCCGuGUCCgGCu -3'
miRNA:   3'- uGCUG----UGGaaaCUGUCGGC-CAGGgCG- -5'
26270 3' -56.1 NC_005345.2 + 1179 0.7 0.425791
Target:  5'- cGCGGCGCacacgGGCGGCuCGGcaguccggCCCGCg -3'
miRNA:   3'- -UGCUGUGgaaa-CUGUCG-GCCa-------GGGCG- -5'
26270 3' -56.1 NC_005345.2 + 47102 0.7 0.425791
Target:  5'- cGCGGCccGCCg--GGCcgcGCCGGgCCCGCu -3'
miRNA:   3'- -UGCUG--UGGaaaCUGu--CGGCCaGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 36104 0.69 0.45489
Target:  5'- cACGAUGCCgcUGcCGGugauCCGGUCgCCGCa -3'
miRNA:   3'- -UGCUGUGGaaACuGUC----GGCCAG-GGCG- -5'
26270 3' -56.1 NC_005345.2 + 48181 0.69 0.464827
Target:  5'- cCGGgcCGCCgucaagGACGGCCGGcguaUCCCGUu -3'
miRNA:   3'- uGCU--GUGGaaa---CUGUCGGCC----AGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 9065 0.69 0.473866
Target:  5'- cGCGGCGCCaUUgcugcccgcggucGACGGUgaCGGUCcCCGCu -3'
miRNA:   3'- -UGCUGUGGaAA-------------CUGUCG--GCCAG-GGCG- -5'
26270 3' -56.1 NC_005345.2 + 46408 0.69 0.485032
Target:  5'- gGCGGCACUUgucGACcGCCG-UCUCGCc -3'
miRNA:   3'- -UGCUGUGGAaa-CUGuCGGCcAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 24605 0.69 0.485032
Target:  5'- aGCGACugCUcgucgGACAuGUCGGUgUCGCc -3'
miRNA:   3'- -UGCUGugGAaa---CUGU-CGGCCAgGGCG- -5'
26270 3' -56.1 NC_005345.2 + 29122 0.68 0.49529
Target:  5'- cGCGGCugCUcUGAUAGgucgucucgugcCCGGcagCCCGCc -3'
miRNA:   3'- -UGCUGugGAaACUGUC------------GGCCa--GGGCG- -5'
26270 3' -56.1 NC_005345.2 + 22198 0.68 0.505646
Target:  5'- gACGA-ACCc--GAuCAGCCGGUCgCGCa -3'
miRNA:   3'- -UGCUgUGGaaaCU-GUCGGCCAGgGCG- -5'
26270 3' -56.1 NC_005345.2 + 24420 0.67 0.602194
Target:  5'- cCGACGCgUgcgUGAUcugauucaggaAGUCGG-CCCGCa -3'
miRNA:   3'- uGCUGUGgAa--ACUG-----------UCGGCCaGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 892 0.66 0.624138
Target:  5'- aACGGCGUCUcgauAUAGCUccgGGUCCCGCa -3'
miRNA:   3'- -UGCUGUGGAaac-UGUCGG---CCAGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.