miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26270 3' -56.1 NC_005345.2 + 41893 0.68 0.547926
Target:  5'- gGCGACGCUUgucgguucGGCcGcCCGGUCCCcgGCa -3'
miRNA:   3'- -UGCUGUGGAaa------CUGuC-GGCCAGGG--CG- -5'
26270 3' -56.1 NC_005345.2 + 41838 0.68 0.53724
Target:  5'- uCGACGCCgucgcaccGCGGCUcGUCCUGCg -3'
miRNA:   3'- uGCUGUGGaaac----UGUCGGcCAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 39127 0.7 0.425791
Target:  5'- cACGGCgaACCUgUGGgAGUCGcUCCCGCu -3'
miRNA:   3'- -UGCUG--UGGAaACUgUCGGCcAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 9796 0.72 0.305923
Target:  5'- aGCGuguuCGCCgcugUGucGCGGCCGGUgCCGCc -3'
miRNA:   3'- -UGCu---GUGGaa--AC--UGUCGGCCAgGGCG- -5'
26270 3' -56.1 NC_005345.2 + 16966 0.66 0.635126
Target:  5'- uCGGCACCU----CGGCCGGcUgCCGUg -3'
miRNA:   3'- uGCUGUGGAaacuGUCGGCC-AgGGCG- -5'
26270 3' -56.1 NC_005345.2 + 18444 0.67 0.602193
Target:  5'- gGCGaaccuGCGCCcgUGGUGGaCCgGGUCCCGCg -3'
miRNA:   3'- -UGC-----UGUGGaaACUGUC-GG-CCAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 9243 0.68 0.505646
Target:  5'- uCGuACGCCUgcGACcacggugcGGCCGacaaGUCCCGCa -3'
miRNA:   3'- uGC-UGUGGAaaCUG--------UCGGC----CAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 35295 0.72 0.305923
Target:  5'- aACGugGCUgugGACGGCCG-UCCuCGCg -3'
miRNA:   3'- -UGCugUGGaaaCUGUCGGCcAGG-GCG- -5'
26270 3' -56.1 NC_005345.2 + 12100 0.67 0.602193
Target:  5'- gACGuCGCCgc---CGGCCGGaUCCCGg -3'
miRNA:   3'- -UGCuGUGGaaacuGUCGGCC-AGGGCg -5'
26270 3' -56.1 NC_005345.2 + 18878 0.73 0.283855
Target:  5'- uCGACAgcgcagguguCCUgUGAcCGGCCGGaCCCGCa -3'
miRNA:   3'- uGCUGU----------GGAaACU-GUCGGCCaGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 24957 0.68 0.53724
Target:  5'- uCGGCcCCgacgGGCGGCCGGUCgaGUg -3'
miRNA:   3'- uGCUGuGGaaa-CUGUCGGCCAGggCG- -5'
26270 3' -56.1 NC_005345.2 + 11478 0.67 0.58035
Target:  5'- gACGACAUCaggGccgcGCAGgCGG-CCCGCa -3'
miRNA:   3'- -UGCUGUGGaaaC----UGUCgGCCaGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 30089 0.69 0.474876
Target:  5'- cACGGCcCCga-GACGGCCGGguucgccgaccCCCGUa -3'
miRNA:   3'- -UGCUGuGGaaaCUGUCGGCCa----------GGGCG- -5'
26270 3' -56.1 NC_005345.2 + 23659 0.69 0.441174
Target:  5'- gACGGCGCCgaccagggucGCGGCCGGUCggGCg -3'
miRNA:   3'- -UGCUGUGGaaac------UGUCGGCCAGggCG- -5'
26270 3' -56.1 NC_005345.2 + 14109 0.71 0.362431
Target:  5'- uGCGcGCACUgcucGACAccaCCGGUCCCGCc -3'
miRNA:   3'- -UGC-UGUGGaaa-CUGUc--GGCCAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 7147 0.72 0.329281
Target:  5'- cACGugGCCcggGACgGGUCGGaCCCGCu -3'
miRNA:   3'- -UGCugUGGaaaCUG-UCGGCCaGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 48968 0.66 0.66475
Target:  5'- aGCGGCAUgCgucUGACGcguguggggagcacGCCGG-CCCGCu -3'
miRNA:   3'- -UGCUGUG-Gaa-ACUGU--------------CGGCCaGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 9345 0.66 0.645013
Target:  5'- uGCGACGCaugguggCUgcgGGCGGCCGGgCUCGa -3'
miRNA:   3'- -UGCUGUG-------GAaa-CUGUCGGCCaGGGCg -5'
26270 3' -56.1 NC_005345.2 + 39219 0.66 0.624138
Target:  5'- uCGACACCUaccUGACcguguggcgGGUCGG-CCCGg -3'
miRNA:   3'- uGCUGUGGAa--ACUG---------UCGGCCaGGGCg -5'
26270 3' -56.1 NC_005345.2 + 36907 0.67 0.602193
Target:  5'- aGCGGgACCgg-GugAGCgGGUCaUCGCc -3'
miRNA:   3'- -UGCUgUGGaaaCugUCGgCCAG-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.