miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26270 3' -56.1 NC_005345.2 + 13215 0.66 0.635126
Target:  5'- gACGACGCCgccGACcuucuucGCCGcGUCCC-Cg -3'
miRNA:   3'- -UGCUGUGGaaaCUGu------CGGC-CAGGGcG- -5'
26270 3' -56.1 NC_005345.2 + 14109 0.71 0.362431
Target:  5'- uGCGcGCACUgcucGACAccaCCGGUCCCGCc -3'
miRNA:   3'- -UGC-UGUGGaaa-CUGUc--GGCCAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 14507 0.66 0.635126
Target:  5'- cGCGACGCCgagcGGCAGCagccacGcCCCGUa -3'
miRNA:   3'- -UGCUGUGGaaa-CUGUCGgc----CaGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 15049 0.66 0.668032
Target:  5'- gGCGAuguCGCCgucgcgGGC-GCCGG-CCUGCa -3'
miRNA:   3'- -UGCU---GUGGaaa---CUGuCGGCCaGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 15562 0.72 0.337355
Target:  5'- gGCGGCACCggcgaccgcGACAGCCGcgaGUCCgGUu -3'
miRNA:   3'- -UGCUGUGGaaa------CUGUCGGC---CAGGgCG- -5'
26270 3' -56.1 NC_005345.2 + 16352 0.69 0.464827
Target:  5'- gGCGGCAUC----GCGGCCGG-CgCCGCg -3'
miRNA:   3'- -UGCUGUGGaaacUGUCGGCCaG-GGCG- -5'
26270 3' -56.1 NC_005345.2 + 16966 0.66 0.635126
Target:  5'- uCGGCACCU----CGGCCGGcUgCCGUg -3'
miRNA:   3'- uGCUGUGGAaacuGUCGGCC-AgGGCG- -5'
26270 3' -56.1 NC_005345.2 + 18444 0.67 0.602193
Target:  5'- gGCGaaccuGCGCCcgUGGUGGaCCgGGUCCCGCg -3'
miRNA:   3'- -UGC-----UGUGGaaACUGUC-GG-CCAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 18878 0.73 0.283855
Target:  5'- uCGACAgcgcagguguCCUgUGAcCGGCCGGaCCCGCa -3'
miRNA:   3'- uGCUGU----------GGAaACU-GUCGGCCaGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 19141 0.68 0.526627
Target:  5'- gGCGACcucgGCCgg-GACGucgucGCCGGgCCCGUa -3'
miRNA:   3'- -UGCUG----UGGaaaCUGU-----CGGCCaGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 19205 0.69 0.464827
Target:  5'- gACGGC-CCc--GACgucgAGCCGGUCCuCGCc -3'
miRNA:   3'- -UGCUGuGGaaaCUG----UCGGCCAGG-GCG- -5'
26270 3' -56.1 NC_005345.2 + 19321 0.68 0.516094
Target:  5'- cACGugGCCgc-GACGauGCCGGgcugCUCGCc -3'
miRNA:   3'- -UGCugUGGaaaCUGU--CGGCCa---GGGCG- -5'
26270 3' -56.1 NC_005345.2 + 20373 0.7 0.388773
Target:  5'- cGCGucauGCGCCUcaUGACcgucaccgAGCCGGcCCCGCc -3'
miRNA:   3'- -UGC----UGUGGAa-ACUG--------UCGGCCaGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 21070 0.66 0.624138
Target:  5'- gACGGCACCcuccgGgucgagaucACAGCCGGcaaguacaCCCGCc -3'
miRNA:   3'- -UGCUGUGGaaa--C---------UGUCGGCCa-------GGGCG- -5'
26270 3' -56.1 NC_005345.2 + 21884 0.71 0.35393
Target:  5'- -gGugAUCgacaGCAGCCGGUUCCGCc -3'
miRNA:   3'- ugCugUGGaaacUGUCGGCCAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 22002 0.72 0.329281
Target:  5'- cGCGcaGCGCCUcgGGCagcucgacgccGGCCGGUgCCGCc -3'
miRNA:   3'- -UGC--UGUGGAaaCUG-----------UCGGCCAgGGCG- -5'
26270 3' -56.1 NC_005345.2 + 22198 0.68 0.505646
Target:  5'- gACGA-ACCc--GAuCAGCCGGUCgCGCa -3'
miRNA:   3'- -UGCUgUGGaaaCU-GUCGGCCAGgGCG- -5'
26270 3' -56.1 NC_005345.2 + 22367 0.66 0.657083
Target:  5'- cGCGGCGCCggccacGAUccGCCGcaCCCGCg -3'
miRNA:   3'- -UGCUGUGGaaa---CUGu-CGGCcaGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 23659 0.69 0.441174
Target:  5'- gACGGCGCCgaccagggucGCGGCCGGUCggGCg -3'
miRNA:   3'- -UGCUGUGGaaac------UGUCGGCCAGggCG- -5'
26270 3' -56.1 NC_005345.2 + 24420 0.67 0.602194
Target:  5'- cCGACGCgUgcgUGAUcugauucaggaAGUCGG-CCCGCa -3'
miRNA:   3'- uGCUGUGgAa--ACUG-----------UCGGCCaGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.