miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26270 3' -56.1 NC_005345.2 + 188 0.67 0.591255
Target:  5'- gUGGCAUCUgcgUGGCAuCCGGcgucacaccgCCCGCa -3'
miRNA:   3'- uGCUGUGGAa--ACUGUcGGCCa---------GGGCG- -5'
26270 3' -56.1 NC_005345.2 + 414 0.66 0.646111
Target:  5'- cGCGGcCACCacuccauGCGGCCGGugUCCCGg -3'
miRNA:   3'- -UGCU-GUGGaaac---UGUCGGCC--AGGGCg -5'
26270 3' -56.1 NC_005345.2 + 892 0.66 0.624138
Target:  5'- aACGGCGUCUcgauAUAGCUccgGGUCCCGCa -3'
miRNA:   3'- -UGCUGUGGAaac-UGUCGG---CCAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 1179 0.7 0.425791
Target:  5'- cGCGGCGCacacgGGCGGCuCGGcaguccggCCCGCg -3'
miRNA:   3'- -UGCUGUGgaaa-CUGUCG-GCCa-------GGGCG- -5'
26270 3' -56.1 NC_005345.2 + 4463 0.66 0.624138
Target:  5'- cCGGCggggGCCc--GGCGGCCGuGUCCgGCu -3'
miRNA:   3'- uGCUG----UGGaaaCUGUCGGC-CAGGgCG- -5'
26270 3' -56.1 NC_005345.2 + 5723 0.68 0.547927
Target:  5'- uCGACGCCag-GcCGGCCGuGUUCCGg -3'
miRNA:   3'- uGCUGUGGaaaCuGUCGGC-CAGGGCg -5'
26270 3' -56.1 NC_005345.2 + 5919 0.66 0.657083
Target:  5'- uGCGG-GCCac-GACAGCgGGUCgCCGUg -3'
miRNA:   3'- -UGCUgUGGaaaCUGUCGgCCAG-GGCG- -5'
26270 3' -56.1 NC_005345.2 + 6357 0.7 0.41634
Target:  5'- aGCGGCGCCgggUUGGCcGCgguggcguugCGGUCCCa- -3'
miRNA:   3'- -UGCUGUGGa--AACUGuCG----------GCCAGGGcg -5'
26270 3' -56.1 NC_005345.2 + 7147 0.72 0.329281
Target:  5'- cACGugGCCcggGACgGGUCGGaCCCGCu -3'
miRNA:   3'- -UGCugUGGaaaCUG-UCGGCCaGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 9065 0.69 0.473866
Target:  5'- cGCGGCGCCaUUgcugcccgcggucGACGGUgaCGGUCcCCGCu -3'
miRNA:   3'- -UGCUGUGGaAA-------------CUGUCG--GCCAG-GGCG- -5'
26270 3' -56.1 NC_005345.2 + 9196 0.66 0.624138
Target:  5'- uCGACGCCg--GGguGCCGuacgcguacguaGUCCCGg -3'
miRNA:   3'- uGCUGUGGaaaCUguCGGC------------CAGGGCg -5'
26270 3' -56.1 NC_005345.2 + 9243 0.68 0.505646
Target:  5'- uCGuACGCCUgcGACcacggugcGGCCGacaaGUCCCGCa -3'
miRNA:   3'- uGC-UGUGGAaaCUG--------UCGGC----CAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 9345 0.66 0.645013
Target:  5'- uGCGACGCaugguggCUgcgGGCGGCCGGgCUCGa -3'
miRNA:   3'- -UGCUGUG-------GAaa-CUGUCGGCCaGGGCg -5'
26270 3' -56.1 NC_005345.2 + 9407 0.72 0.313565
Target:  5'- gACGGCGCg--UGGCAGCgGgGUCUCGCc -3'
miRNA:   3'- -UGCUGUGgaaACUGUCGgC-CAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 9796 0.72 0.305923
Target:  5'- aGCGuguuCGCCgcugUGucGCGGCCGGUgCCGCc -3'
miRNA:   3'- -UGCu---GUGGaa--AC--UGUCGGCCAgGGCG- -5'
26270 3' -56.1 NC_005345.2 + 11353 0.69 0.485032
Target:  5'- aGCGGCACCgccaacGGCAGCagcccCGGUCgcggCCGCc -3'
miRNA:   3'- -UGCUGUGGaaa---CUGUCG-----GCCAG----GGCG- -5'
26270 3' -56.1 NC_005345.2 + 11415 0.73 0.256416
Target:  5'- gACGACGCCgac--CAGCCGG-CgCCGCg -3'
miRNA:   3'- -UGCUGUGGaaacuGUCGGCCaG-GGCG- -5'
26270 3' -56.1 NC_005345.2 + 11478 0.67 0.58035
Target:  5'- gACGACAUCaggGccgcGCAGgCGG-CCCGCa -3'
miRNA:   3'- -UGCUGUGGaaaC----UGUCgGCCaGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 12100 0.67 0.602193
Target:  5'- gACGuCGCCgc---CGGCCGGaUCCCGg -3'
miRNA:   3'- -UGCuGUGGaaacuGUCGGCC-AGGGCg -5'
26270 3' -56.1 NC_005345.2 + 12972 0.66 0.668032
Target:  5'- -gGACACCggcGACcaacgcugcacGCCGGaCCCGCc -3'
miRNA:   3'- ugCUGUGGaaaCUGu----------CGGCCaGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.