miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26270 3' -56.1 NC_005345.2 + 39728 1.11 0.000559
Target:  5'- cACGACACCUUUGACAGCCGGUCCCGCu -3'
miRNA:   3'- -UGCUGUGGAAACUGUCGGCCAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 24476 0.77 0.150429
Target:  5'- gGCGAuCAUC---GACGGCCGGUCCCGg -3'
miRNA:   3'- -UGCU-GUGGaaaCUGUCGGCCAGGGCg -5'
26270 3' -56.1 NC_005345.2 + 37032 0.75 0.208085
Target:  5'- aGCGGCACCg--GGCgAGCCGGgaUCCgGCc -3'
miRNA:   3'- -UGCUGUGGaaaCUG-UCGGCC--AGGgCG- -5'
26270 3' -56.1 NC_005345.2 + 45298 0.74 0.237292
Target:  5'- cCGACGCCgau--CAGCCGGgUCCGCa -3'
miRNA:   3'- uGCUGUGGaaacuGUCGGCCaGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 39546 0.74 0.24353
Target:  5'- uCGuGCACCggccccGCGGCCGGUCCCGg -3'
miRNA:   3'- uGC-UGUGGaaac--UGUCGGCCAGGGCg -5'
26270 3' -56.1 NC_005345.2 + 11415 0.73 0.256416
Target:  5'- gACGACGCCgac--CAGCCGG-CgCCGCg -3'
miRNA:   3'- -UGCUGUGGaaacuGUCGGCCaG-GGCG- -5'
26270 3' -56.1 NC_005345.2 + 34488 0.73 0.263066
Target:  5'- gGCGACGCCgcc--CGGCCGGUgCCGa -3'
miRNA:   3'- -UGCUGUGGaaacuGUCGGCCAgGGCg -5'
26270 3' -56.1 NC_005345.2 + 18878 0.73 0.283855
Target:  5'- uCGACAgcgcagguguCCUgUGAcCGGCCGGaCCCGCa -3'
miRNA:   3'- uGCUGU----------GGAaACU-GUCGGCCaGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 9796 0.72 0.305923
Target:  5'- aGCGuguuCGCCgcugUGucGCGGCCGGUgCCGCc -3'
miRNA:   3'- -UGCu---GUGGaa--AC--UGUCGGCCAgGGCG- -5'
26270 3' -56.1 NC_005345.2 + 35295 0.72 0.305923
Target:  5'- aACGugGCUgugGACGGCCG-UCCuCGCg -3'
miRNA:   3'- -UGCugUGGaaaCUGUCGGCcAGG-GCG- -5'
26270 3' -56.1 NC_005345.2 + 9407 0.72 0.313565
Target:  5'- gACGGCGCg--UGGCAGCgGgGUCUCGCc -3'
miRNA:   3'- -UGCUGUGgaaACUGUCGgC-CAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 42725 0.72 0.329281
Target:  5'- gGCGACcacucGCCgaccGACGGCgGG-CCCGCg -3'
miRNA:   3'- -UGCUG-----UGGaaa-CUGUCGgCCaGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 7147 0.72 0.329281
Target:  5'- cACGugGCCcggGACgGGUCGGaCCCGCu -3'
miRNA:   3'- -UGCugUGGaaaCUG-UCGGCCaGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 22002 0.72 0.329281
Target:  5'- cGCGcaGCGCCUcgGGCagcucgacgccGGCCGGUgCCGCc -3'
miRNA:   3'- -UGC--UGUGGAaaCUG-----------UCGGCCAgGGCG- -5'
26270 3' -56.1 NC_005345.2 + 41405 0.72 0.329281
Target:  5'- aGCGGCguGCCgucg--AGCCGGUCCUGCa -3'
miRNA:   3'- -UGCUG--UGGaaacugUCGGCCAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 15562 0.72 0.337355
Target:  5'- gGCGGCACCggcgaccgcGACAGCCGcgaGUCCgGUu -3'
miRNA:   3'- -UGCUGUGGaaa------CUGUCGGC---CAGGgCG- -5'
26270 3' -56.1 NC_005345.2 + 29886 0.71 0.345571
Target:  5'- cGCGGcCGCCgucGGCAucCCGGUCCUGCg -3'
miRNA:   3'- -UGCU-GUGGaaaCUGUc-GGCCAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 21884 0.71 0.35393
Target:  5'- -gGugAUCgacaGCAGCCGGUUCCGCc -3'
miRNA:   3'- ugCugUGGaaacUGUCGGCCAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 14109 0.71 0.362431
Target:  5'- uGCGcGCACUgcucGACAccaCCGGUCCCGCc -3'
miRNA:   3'- -UGC-UGUGGaaa-CUGUc--GGCCAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 20373 0.7 0.388773
Target:  5'- cGCGucauGCGCCUcaUGACcgucaccgAGCCGGcCCCGCc -3'
miRNA:   3'- -UGC----UGUGGAa-ACUG--------UCGGCCaGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.