miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26270 3' -56.1 NC_005345.2 + 26738 0.66 0.668032
Target:  5'- gUGACAgCgaUGAacCGGCCcGUCCCGUa -3'
miRNA:   3'- uGCUGUgGaaACU--GUCGGcCAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 4463 0.66 0.624138
Target:  5'- cCGGCggggGCCc--GGCGGCCGuGUCCgGCu -3'
miRNA:   3'- uGCUG----UGGaaaCUGUCGGC-CAGGgCG- -5'
26270 3' -56.1 NC_005345.2 + 892 0.66 0.624138
Target:  5'- aACGGCGUCUcgauAUAGCUccgGGUCCCGCa -3'
miRNA:   3'- -UGCUGUGGAaac-UGUCGG---CCAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 39219 0.66 0.624138
Target:  5'- uCGACACCUaccUGACcguguggcgGGUCGG-CCCGg -3'
miRNA:   3'- uGCUGUGGAa--ACUG---------UCGGCCaGGGCg -5'
26270 3' -56.1 NC_005345.2 + 21070 0.66 0.624138
Target:  5'- gACGGCACCcuccgGgucgagaucACAGCCGGcaaguacaCCCGCc -3'
miRNA:   3'- -UGCUGUGGaaa--C---------UGUCGGCCa-------GGGCG- -5'
26270 3' -56.1 NC_005345.2 + 34086 0.66 0.635126
Target:  5'- -aGGCGCUgca---GGCCGGcgCCCGCg -3'
miRNA:   3'- ugCUGUGGaaacugUCGGCCa-GGGCG- -5'
26270 3' -56.1 NC_005345.2 + 9345 0.66 0.645013
Target:  5'- uGCGACGCaugguggCUgcgGGCGGCCGGgCUCGa -3'
miRNA:   3'- -UGCUGUG-------GAaa-CUGUCGGCCaGGGCg -5'
26270 3' -56.1 NC_005345.2 + 29763 0.66 0.668032
Target:  5'- cGCGACGCUgcucGGCAcgaccGCCGaGUCCCu- -3'
miRNA:   3'- -UGCUGUGGaaa-CUGU-----CGGC-CAGGGcg -5'
26270 3' -56.1 NC_005345.2 + 16966 0.66 0.635126
Target:  5'- uCGGCACCU----CGGCCGGcUgCCGUg -3'
miRNA:   3'- uGCUGUGGAaacuGUCGGCC-AgGGCG- -5'
26270 3' -56.1 NC_005345.2 + 30131 0.66 0.628533
Target:  5'- aGCGGC-CCgagGGCGGCgCGccacccgucgaggucGUCCCGCc -3'
miRNA:   3'- -UGCUGuGGaaaCUGUCG-GC---------------CAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 14507 0.66 0.635126
Target:  5'- cGCGACGCCgagcGGCAGCagccacGcCCCGUa -3'
miRNA:   3'- -UGCUGUGGaaa-CUGUCGgc----CaGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 13215 0.66 0.635126
Target:  5'- gACGACGCCgccGACcuucuucGCCGcGUCCC-Cg -3'
miRNA:   3'- -UGCUGUGGaaaCUGu------CGGC-CAGGGcG- -5'
26270 3' -56.1 NC_005345.2 + 15049 0.66 0.668032
Target:  5'- gGCGAuguCGCCgucgcgGGC-GCCGG-CCUGCa -3'
miRNA:   3'- -UGCU---GUGGaaa---CUGuCGGCCaGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 12972 0.66 0.668032
Target:  5'- -gGACACCggcGACcaacgcugcacGCCGGaCCCGCc -3'
miRNA:   3'- ugCUGUGGaaaCUGu----------CGGCCaGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 37678 0.66 0.666939
Target:  5'- cGCGGCccugaugucgucgGCCgugGGCcGCCaGUCCUGCg -3'
miRNA:   3'- -UGCUG-------------UGGaaaCUGuCGGcCAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 22367 0.66 0.657083
Target:  5'- cGCGGCGCCggccacGAUccGCCGcaCCCGCg -3'
miRNA:   3'- -UGCUGUGGaaa---CUGu-CGGCcaGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 5919 0.66 0.657083
Target:  5'- uGCGG-GCCac-GACAGCgGGUCgCCGUg -3'
miRNA:   3'- -UGCUgUGGaaaCUGUCGgCCAG-GGCG- -5'
26270 3' -56.1 NC_005345.2 + 39458 0.66 0.657083
Target:  5'- gGCGGCccgcugaucgGCCU---GCAGCCGGcggcgCUCGCg -3'
miRNA:   3'- -UGCUG----------UGGAaacUGUCGGCCa----GGGCG- -5'
26270 3' -56.1 NC_005345.2 + 32694 0.66 0.653793
Target:  5'- uCGACACCgaggggGAacacaucggcgaacCAGCCGaGUCCCucgGCg -3'
miRNA:   3'- uGCUGUGGaaa---CU--------------GUCGGC-CAGGG---CG- -5'
26270 3' -56.1 NC_005345.2 + 34456 0.66 0.646111
Target:  5'- cGCcACACCacggGcACGGCCGGcCCgGCa -3'
miRNA:   3'- -UGcUGUGGaaa-C-UGUCGGCCaGGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.