miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26270 3' -56.1 NC_005345.2 + 24476 0.77 0.150429
Target:  5'- gGCGAuCAUC---GACGGCCGGUCCCGg -3'
miRNA:   3'- -UGCU-GUGGaaaCUGUCGGCCAGGGCg -5'
26270 3' -56.1 NC_005345.2 + 11353 0.69 0.485032
Target:  5'- aGCGGCACCgccaacGGCAGCagcccCGGUCgcggCCGCc -3'
miRNA:   3'- -UGCUGUGGaaa---CUGUCG-----GCCAG----GGCG- -5'
26270 3' -56.1 NC_005345.2 + 9243 0.68 0.505646
Target:  5'- uCGuACGCCUgcGACcacggugcGGCCGacaaGUCCCGCa -3'
miRNA:   3'- uGC-UGUGGAaaCUG--------UCGGC----CAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 29763 0.66 0.668032
Target:  5'- cGCGACGCUgcucGGCAcgaccGCCGaGUCCCu- -3'
miRNA:   3'- -UGCUGUGGaaa-CUGU-----CGGC-CAGGGcg -5'
26270 3' -56.1 NC_005345.2 + 35295 0.72 0.305923
Target:  5'- aACGugGCUgugGACGGCCG-UCCuCGCg -3'
miRNA:   3'- -UGCugUGGaaaCUGUCGGCcAGG-GCG- -5'
26270 3' -56.1 NC_005345.2 + 9796 0.72 0.305923
Target:  5'- aGCGuguuCGCCgcugUGucGCGGCCGGUgCCGCc -3'
miRNA:   3'- -UGCu---GUGGaa--AC--UGUCGGCCAgGGCG- -5'
26270 3' -56.1 NC_005345.2 + 42725 0.72 0.329281
Target:  5'- gGCGACcacucGCCgaccGACGGCgGG-CCCGCg -3'
miRNA:   3'- -UGCUG-----UGGaaa-CUGUCGgCCaGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 29886 0.71 0.345571
Target:  5'- cGCGGcCGCCgucGGCAucCCGGUCCUGCg -3'
miRNA:   3'- -UGCU-GUGGaaaCUGUc-GGCCAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 47052 0.7 0.397828
Target:  5'- gACGACGCUgacccCGGCCGGgacaaUCCUGCa -3'
miRNA:   3'- -UGCUGUGGaaacuGUCGGCC-----AGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 30089 0.69 0.474876
Target:  5'- cACGGCcCCga-GACGGCCGGguucgccgaccCCCGUa -3'
miRNA:   3'- -UGCUGuGGaaaCUGUCGGCCa----------GGGCG- -5'
26270 3' -56.1 NC_005345.2 + 23659 0.69 0.441174
Target:  5'- gACGGCGCCgaccagggucGCGGCCGGUCggGCg -3'
miRNA:   3'- -UGCUGUGGaaac------UGUCGGCCAGggCG- -5'
26270 3' -56.1 NC_005345.2 + 20373 0.7 0.388773
Target:  5'- cGCGucauGCGCCUcaUGACcgucaccgAGCCGGcCCCGCc -3'
miRNA:   3'- -UGC----UGUGGAa-ACUG--------UCGGCCaGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 39546 0.74 0.24353
Target:  5'- uCGuGCACCggccccGCGGCCGGUCCCGg -3'
miRNA:   3'- uGC-UGUGGaaac--UGUCGGCCAGGGCg -5'
26270 3' -56.1 NC_005345.2 + 16352 0.69 0.464827
Target:  5'- gGCGGCAUC----GCGGCCGG-CgCCGCg -3'
miRNA:   3'- -UGCUGUGGaaacUGUCGGCCaG-GGCG- -5'
26270 3' -56.1 NC_005345.2 + 11415 0.73 0.256416
Target:  5'- gACGACGCCgac--CAGCCGG-CgCCGCg -3'
miRNA:   3'- -UGCUGUGGaaacuGUCGGCCaG-GGCG- -5'
26270 3' -56.1 NC_005345.2 + 14109 0.71 0.362431
Target:  5'- uGCGcGCACUgcucGACAccaCCGGUCCCGCc -3'
miRNA:   3'- -UGC-UGUGGaaa-CUGUc--GGCCAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 19205 0.69 0.464827
Target:  5'- gACGGC-CCc--GACgucgAGCCGGUCCuCGCc -3'
miRNA:   3'- -UGCUGuGGaaaCUG----UCGGCCAGG-GCG- -5'
26270 3' -56.1 NC_005345.2 + 24537 0.68 0.492202
Target:  5'- gGCGACACCgacauguccGACGagcagucgcucgucGCCGG-CCUGCg -3'
miRNA:   3'- -UGCUGUGGaaa------CUGU--------------CGGCCaGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 18878 0.73 0.283855
Target:  5'- uCGACAgcgcagguguCCUgUGAcCGGCCGGaCCCGCa -3'
miRNA:   3'- uGCUGU----------GGAaACU-GUCGGCCaGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 7147 0.72 0.329281
Target:  5'- cACGugGCCcggGACgGGUCGGaCCCGCu -3'
miRNA:   3'- -UGCugUGGaaaCUG-UCGGCCaGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.