Results 1 - 20 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26270 | 3' | -56.1 | NC_005345.2 | + | 22198 | 0.68 | 0.505646 |
Target: 5'- gACGA-ACCc--GAuCAGCCGGUCgCGCa -3' miRNA: 3'- -UGCUgUGGaaaCU-GUCGGCCAGgGCG- -5' |
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26270 | 3' | -56.1 | NC_005345.2 | + | 4463 | 0.66 | 0.624138 |
Target: 5'- cCGGCggggGCCc--GGCGGCCGuGUCCgGCu -3' miRNA: 3'- uGCUG----UGGaaaCUGUCGGC-CAGGgCG- -5' |
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26270 | 3' | -56.1 | NC_005345.2 | + | 892 | 0.66 | 0.624138 |
Target: 5'- aACGGCGUCUcgauAUAGCUccgGGUCCCGCa -3' miRNA: 3'- -UGCUGUGGAaac-UGUCGG---CCAGGGCG- -5' |
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26270 | 3' | -56.1 | NC_005345.2 | + | 24420 | 0.67 | 0.602194 |
Target: 5'- cCGACGCgUgcgUGAUcugauucaggaAGUCGG-CCCGCa -3' miRNA: 3'- uGCUGUGgAa--ACUG-----------UCGGCCaGGGCG- -5' |
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26270 | 3' | -56.1 | NC_005345.2 | + | 30480 | 0.67 | 0.565158 |
Target: 5'- gACGGCACCcucuucggugaGGCuGCCGGacagcgaCCCGCg -3' miRNA: 3'- -UGCUGUGGaaa--------CUGuCGGCCa------GGGCG- -5' |
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26270 | 3' | -56.1 | NC_005345.2 | + | 5723 | 0.68 | 0.547927 |
Target: 5'- uCGACGCCag-GcCGGCCGuGUUCCGg -3' miRNA: 3'- uGCUGUGGaaaCuGUCGGC-CAGGGCg -5' |
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26270 | 3' | -56.1 | NC_005345.2 | + | 19141 | 0.68 | 0.526627 |
Target: 5'- gGCGACcucgGCCgg-GACGucgucGCCGGgCCCGUa -3' miRNA: 3'- -UGCUG----UGGaaaCUGU-----CGGCCaGGGCG- -5' |
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26270 | 3' | -56.1 | NC_005345.2 | + | 19321 | 0.68 | 0.516094 |
Target: 5'- cACGugGCCgc-GACGauGCCGGgcugCUCGCc -3' miRNA: 3'- -UGCugUGGaaaCUGU--CGGCCa---GGGCG- -5' |
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26270 | 3' | -56.1 | NC_005345.2 | + | 32307 | 0.68 | 0.505646 |
Target: 5'- aGCuGCGCCcgguacACgAGCCGGUCCUGCu -3' miRNA: 3'- -UGcUGUGGaaac--UG-UCGGCCAGGGCG- -5' |
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26270 | 3' | -56.1 | NC_005345.2 | + | 30131 | 0.66 | 0.628533 |
Target: 5'- aGCGGC-CCgagGGCGGCgCGccacccgucgaggucGUCCCGCc -3' miRNA: 3'- -UGCUGuGGaaaCUGUCG-GC---------------CAGGGCG- -5' |
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26270 | 3' | -56.1 | NC_005345.2 | + | 14507 | 0.66 | 0.635126 |
Target: 5'- cGCGACGCCgagcGGCAGCagccacGcCCCGUa -3' miRNA: 3'- -UGCUGUGGaaa-CUGUCGgc----CaGGGCG- -5' |
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26270 | 3' | -56.1 | NC_005345.2 | + | 13215 | 0.66 | 0.635126 |
Target: 5'- gACGACGCCgccGACcuucuucGCCGcGUCCC-Cg -3' miRNA: 3'- -UGCUGUGGaaaCUGu------CGGC-CAGGGcG- -5' |
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26270 | 3' | -56.1 | NC_005345.2 | + | 15049 | 0.66 | 0.668032 |
Target: 5'- gGCGAuguCGCCgucgcgGGC-GCCGG-CCUGCa -3' miRNA: 3'- -UGCU---GUGGaaa---CUGuCGGCCaGGGCG- -5' |
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26270 | 3' | -56.1 | NC_005345.2 | + | 12972 | 0.66 | 0.668032 |
Target: 5'- -gGACACCggcGACcaacgcugcacGCCGGaCCCGCc -3' miRNA: 3'- ugCUGUGGaaaCUGu----------CGGCCaGGGCG- -5' |
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26270 | 3' | -56.1 | NC_005345.2 | + | 37678 | 0.66 | 0.666939 |
Target: 5'- cGCGGCccugaugucgucgGCCgugGGCcGCCaGUCCUGCg -3' miRNA: 3'- -UGCUG-------------UGGaaaCUGuCGGcCAGGGCG- -5' |
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26270 | 3' | -56.1 | NC_005345.2 | + | 22367 | 0.66 | 0.657083 |
Target: 5'- cGCGGCGCCggccacGAUccGCCGcaCCCGCg -3' miRNA: 3'- -UGCUGUGGaaa---CUGu-CGGCcaGGGCG- -5' |
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26270 | 3' | -56.1 | NC_005345.2 | + | 5919 | 0.66 | 0.657083 |
Target: 5'- uGCGG-GCCac-GACAGCgGGUCgCCGUg -3' miRNA: 3'- -UGCUgUGGaaaCUGUCGgCCAG-GGCG- -5' |
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26270 | 3' | -56.1 | NC_005345.2 | + | 39458 | 0.66 | 0.657083 |
Target: 5'- gGCGGCccgcugaucgGCCU---GCAGCCGGcggcgCUCGCg -3' miRNA: 3'- -UGCUG----------UGGAaacUGUCGGCCa----GGGCG- -5' |
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26270 | 3' | -56.1 | NC_005345.2 | + | 32694 | 0.66 | 0.653793 |
Target: 5'- uCGACACCgaggggGAacacaucggcgaacCAGCCGaGUCCCucgGCg -3' miRNA: 3'- uGCUGUGGaaa---CU--------------GUCGGC-CAGGG---CG- -5' |
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26270 | 3' | -56.1 | NC_005345.2 | + | 34456 | 0.66 | 0.646111 |
Target: 5'- cGCcACACCacggGcACGGCCGGcCCgGCa -3' miRNA: 3'- -UGcUGUGGaaa-C-UGUCGGCCaGGgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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