miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26270 3' -56.1 NC_005345.2 + 48968 0.66 0.66475
Target:  5'- aGCGGCAUgCgucUGACGcguguggggagcacGCCGG-CCCGCu -3'
miRNA:   3'- -UGCUGUG-Gaa-ACUGU--------------CGGCCaGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 48181 0.69 0.464827
Target:  5'- cCGGgcCGCCgucaagGACGGCCGGcguaUCCCGUu -3'
miRNA:   3'- uGCU--GUGGaaa---CUGUCGGCC----AGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 47102 0.7 0.425791
Target:  5'- cGCGGCccGCCg--GGCcgcGCCGGgCCCGCu -3'
miRNA:   3'- -UGCUG--UGGaaaCUGu--CGGCCaGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 47052 0.7 0.397828
Target:  5'- gACGACGCUgacccCGGCCGGgacaaUCCUGCa -3'
miRNA:   3'- -UGCUGUGGaaacuGUCGGCC-----AGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 46408 0.69 0.485032
Target:  5'- gGCGGCACUUgucGACcGCCG-UCUCGCc -3'
miRNA:   3'- -UGCUGUGGAaa-CUGuCGGCcAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 45298 0.74 0.237292
Target:  5'- cCGACGCCgau--CAGCCGGgUCCGCa -3'
miRNA:   3'- uGCUGUGGaaacuGUCGGCCaGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 44669 0.66 0.666938
Target:  5'- cACGGCucgucgaGCCg--GACAcggccGCCGGgccCCCGCc -3'
miRNA:   3'- -UGCUG-------UGGaaaCUGU-----CGGCCa--GGGCG- -5'
26270 3' -56.1 NC_005345.2 + 42725 0.72 0.329281
Target:  5'- gGCGACcacucGCCgaccGACGGCgGG-CCCGCg -3'
miRNA:   3'- -UGCUG-----UGGaaa-CUGUCGgCCaGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 41893 0.68 0.547926
Target:  5'- gGCGACGCUUgucgguucGGCcGcCCGGUCCCcgGCa -3'
miRNA:   3'- -UGCUGUGGAaa------CUGuC-GGCCAGGG--CG- -5'
26270 3' -56.1 NC_005345.2 + 41838 0.68 0.53724
Target:  5'- uCGACGCCgucgcaccGCGGCUcGUCCUGCg -3'
miRNA:   3'- uGCUGUGGaaac----UGUCGGcCAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 41405 0.72 0.329281
Target:  5'- aGCGGCguGCCgucg--AGCCGGUCCUGCa -3'
miRNA:   3'- -UGCUG--UGGaaacugUCGGCCAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 39728 1.11 0.000559
Target:  5'- cACGACACCUUUGACAGCCGGUCCCGCu -3'
miRNA:   3'- -UGCUGUGGAAACUGUCGGCCAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 39546 0.74 0.24353
Target:  5'- uCGuGCACCggccccGCGGCCGGUCCCGg -3'
miRNA:   3'- uGC-UGUGGaaac--UGUCGGCCAGGGCg -5'
26270 3' -56.1 NC_005345.2 + 39458 0.66 0.657083
Target:  5'- gGCGGCccgcugaucgGCCU---GCAGCCGGcggcgCUCGCg -3'
miRNA:   3'- -UGCUG----------UGGAaacUGUCGGCCa----GGGCG- -5'
26270 3' -56.1 NC_005345.2 + 39219 0.66 0.624138
Target:  5'- uCGACACCUaccUGACcguguggcgGGUCGG-CCCGg -3'
miRNA:   3'- uGCUGUGGAa--ACUG---------UCGGCCaGGGCg -5'
26270 3' -56.1 NC_005345.2 + 39127 0.7 0.425791
Target:  5'- cACGGCgaACCUgUGGgAGUCGcUCCCGCu -3'
miRNA:   3'- -UGCUG--UGGAaACUgUCGGCcAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 37814 0.67 0.591255
Target:  5'- uCGGCACCa---ACGGCCGGaacggCCCGg -3'
miRNA:   3'- uGCUGUGGaaacUGUCGGCCa----GGGCg -5'
26270 3' -56.1 NC_005345.2 + 37678 0.66 0.666939
Target:  5'- cGCGGCccugaugucgucgGCCgugGGCcGCCaGUCCUGCg -3'
miRNA:   3'- -UGCUG-------------UGGaaaCUGuCGGcCAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 37032 0.75 0.208085
Target:  5'- aGCGGCACCg--GGCgAGCCGGgaUCCgGCc -3'
miRNA:   3'- -UGCUGUGGaaaCUG-UCGGCC--AGGgCG- -5'
26270 3' -56.1 NC_005345.2 + 36907 0.67 0.602193
Target:  5'- aGCGGgACCgg-GugAGCgGGUCaUCGCc -3'
miRNA:   3'- -UGCUgUGGaaaCugUCGgCCAG-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.