miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26270 3' -56.1 NC_005345.2 + 19321 0.68 0.516094
Target:  5'- cACGugGCCgc-GACGauGCCGGgcugCUCGCc -3'
miRNA:   3'- -UGCugUGGaaaCUGU--CGGCCa---GGGCG- -5'
26270 3' -56.1 NC_005345.2 + 9243 0.68 0.505646
Target:  5'- uCGuACGCCUgcGACcacggugcGGCCGacaaGUCCCGCa -3'
miRNA:   3'- uGC-UGUGGAaaCUG--------UCGGC----CAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 22198 0.68 0.505646
Target:  5'- gACGA-ACCc--GAuCAGCCGGUCgCGCa -3'
miRNA:   3'- -UGCUgUGGaaaCU-GUCGGCCAGgGCG- -5'
26270 3' -56.1 NC_005345.2 + 32307 0.68 0.505646
Target:  5'- aGCuGCGCCcgguacACgAGCCGGUCCUGCu -3'
miRNA:   3'- -UGcUGUGGaaac--UG-UCGGCCAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 29122 0.68 0.49529
Target:  5'- cGCGGCugCUcUGAUAGgucgucucgugcCCGGcagCCCGCc -3'
miRNA:   3'- -UGCUGugGAaACUGUC------------GGCCa--GGGCG- -5'
26270 3' -56.1 NC_005345.2 + 24537 0.68 0.492202
Target:  5'- gGCGACACCgacauguccGACGagcagucgcucgucGCCGG-CCUGCg -3'
miRNA:   3'- -UGCUGUGGaaa------CUGU--------------CGGCCaGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 46408 0.69 0.485032
Target:  5'- gGCGGCACUUgucGACcGCCG-UCUCGCc -3'
miRNA:   3'- -UGCUGUGGAaa-CUGuCGGCcAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 24605 0.69 0.485032
Target:  5'- aGCGACugCUcgucgGACAuGUCGGUgUCGCc -3'
miRNA:   3'- -UGCUGugGAaa---CUGU-CGGCCAgGGCG- -5'
26270 3' -56.1 NC_005345.2 + 11353 0.69 0.485032
Target:  5'- aGCGGCACCgccaacGGCAGCagcccCGGUCgcggCCGCc -3'
miRNA:   3'- -UGCUGUGGaaa---CUGUCG-----GCCAG----GGCG- -5'
26270 3' -56.1 NC_005345.2 + 30089 0.69 0.474876
Target:  5'- cACGGCcCCga-GACGGCCGGguucgccgaccCCCGUa -3'
miRNA:   3'- -UGCUGuGGaaaCUGUCGGCCa----------GGGCG- -5'
26270 3' -56.1 NC_005345.2 + 9065 0.69 0.473866
Target:  5'- cGCGGCGCCaUUgcugcccgcggucGACGGUgaCGGUCcCCGCu -3'
miRNA:   3'- -UGCUGUGGaAA-------------CUGUCG--GCCAG-GGCG- -5'
26270 3' -56.1 NC_005345.2 + 19205 0.69 0.464827
Target:  5'- gACGGC-CCc--GACgucgAGCCGGUCCuCGCc -3'
miRNA:   3'- -UGCUGuGGaaaCUG----UCGGCCAGG-GCG- -5'
26270 3' -56.1 NC_005345.2 + 16352 0.69 0.464827
Target:  5'- gGCGGCAUC----GCGGCCGG-CgCCGCg -3'
miRNA:   3'- -UGCUGUGGaaacUGUCGGCCaG-GGCG- -5'
26270 3' -56.1 NC_005345.2 + 48181 0.69 0.464827
Target:  5'- cCGGgcCGCCgucaagGACGGCCGGcguaUCCCGUu -3'
miRNA:   3'- uGCU--GUGGaaa---CUGUCGGCC----AGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 36104 0.69 0.45489
Target:  5'- cACGAUGCCgcUGcCGGugauCCGGUCgCCGCa -3'
miRNA:   3'- -UGCUGUGGaaACuGUC----GGCCAG-GGCG- -5'
26270 3' -56.1 NC_005345.2 + 23659 0.69 0.441174
Target:  5'- gACGGCGCCgaccagggucGCGGCCGGUCggGCg -3'
miRNA:   3'- -UGCUGUGGaaac------UGUCGGCCAGggCG- -5'
26270 3' -56.1 NC_005345.2 + 1179 0.7 0.425791
Target:  5'- cGCGGCGCacacgGGCGGCuCGGcaguccggCCCGCg -3'
miRNA:   3'- -UGCUGUGgaaa-CUGUCG-GCCa-------GGGCG- -5'
26270 3' -56.1 NC_005345.2 + 47102 0.7 0.425791
Target:  5'- cGCGGCccGCCg--GGCcgcGCCGGgCCCGCu -3'
miRNA:   3'- -UGCUG--UGGaaaCUGu--CGGCCaGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 39127 0.7 0.425791
Target:  5'- cACGGCgaACCUgUGGgAGUCGcUCCCGCu -3'
miRNA:   3'- -UGCUG--UGGAaACUgUCGGCcAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 6357 0.7 0.41634
Target:  5'- aGCGGCGCCgggUUGGCcGCgguggcguugCGGUCCCa- -3'
miRNA:   3'- -UGCUGUGGa--AACUGuCG----------GCCAGGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.