miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26270 3' -56.1 NC_005345.2 + 30131 0.66 0.628533
Target:  5'- aGCGGC-CCgagGGCGGCgCGccacccgucgaggucGUCCCGCc -3'
miRNA:   3'- -UGCUGuGGaaaCUGUCG-GC---------------CAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 4463 0.66 0.624138
Target:  5'- cCGGCggggGCCc--GGCGGCCGuGUCCgGCu -3'
miRNA:   3'- uGCUG----UGGaaaCUGUCGGC-CAGGgCG- -5'
26270 3' -56.1 NC_005345.2 + 9196 0.66 0.624138
Target:  5'- uCGACGCCg--GGguGCCGuacgcguacguaGUCCCGg -3'
miRNA:   3'- uGCUGUGGaaaCUguCGGC------------CAGGGCg -5'
26270 3' -56.1 NC_005345.2 + 39219 0.66 0.624138
Target:  5'- uCGACACCUaccUGACcguguggcgGGUCGG-CCCGg -3'
miRNA:   3'- uGCUGUGGAa--ACUG---------UCGGCCaGGGCg -5'
26270 3' -56.1 NC_005345.2 + 21070 0.66 0.624138
Target:  5'- gACGGCACCcuccgGgucgagaucACAGCCGGcaaguacaCCCGCc -3'
miRNA:   3'- -UGCUGUGGaaa--C---------UGUCGGCCa-------GGGCG- -5'
26270 3' -56.1 NC_005345.2 + 892 0.66 0.624138
Target:  5'- aACGGCGUCUcgauAUAGCUccgGGUCCCGCa -3'
miRNA:   3'- -UGCUGUGGAaac-UGUCGG---CCAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 31676 0.67 0.613157
Target:  5'- cCGACGCCga-GACAGgCGcagCCCGUu -3'
miRNA:   3'- uGCUGUGGaaaCUGUCgGCca-GGGCG- -5'
26270 3' -56.1 NC_005345.2 + 24420 0.67 0.602194
Target:  5'- cCGACGCgUgcgUGAUcugauucaggaAGUCGG-CCCGCa -3'
miRNA:   3'- uGCUGUGgAa--ACUG-----------UCGGCCaGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 12100 0.67 0.602193
Target:  5'- gACGuCGCCgc---CGGCCGGaUCCCGg -3'
miRNA:   3'- -UGCuGUGGaaacuGUCGGCC-AGGGCg -5'
26270 3' -56.1 NC_005345.2 + 36907 0.67 0.602193
Target:  5'- aGCGGgACCgg-GugAGCgGGUCaUCGCc -3'
miRNA:   3'- -UGCUgUGGaaaCugUCGgCCAG-GGCG- -5'
26270 3' -56.1 NC_005345.2 + 18444 0.67 0.602193
Target:  5'- gGCGaaccuGCGCCcgUGGUGGaCCgGGUCCCGCg -3'
miRNA:   3'- -UGC-----UGUGGaaACUGUC-GG-CCAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 188 0.67 0.591255
Target:  5'- gUGGCAUCUgcgUGGCAuCCGGcgucacaccgCCCGCa -3'
miRNA:   3'- uGCUGUGGAa--ACUGUcGGCCa---------GGGCG- -5'
26270 3' -56.1 NC_005345.2 + 37814 0.67 0.591255
Target:  5'- uCGGCACCa---ACGGCCGGaacggCCCGg -3'
miRNA:   3'- uGCUGUGGaaacUGUCGGCCa----GGGCg -5'
26270 3' -56.1 NC_005345.2 + 11478 0.67 0.58035
Target:  5'- gACGACAUCaggGccgcGCAGgCGG-CCCGCa -3'
miRNA:   3'- -UGCUGUGGaaaC----UGUCgGCCaGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 30480 0.67 0.565158
Target:  5'- gACGGCACCcucuucggugaGGCuGCCGGacagcgaCCCGCg -3'
miRNA:   3'- -UGCUGUGGaaa--------CUGuCGGCCa------GGGCG- -5'
26270 3' -56.1 NC_005345.2 + 5723 0.68 0.547927
Target:  5'- uCGACGCCag-GcCGGCCGuGUUCCGg -3'
miRNA:   3'- uGCUGUGGaaaCuGUCGGC-CAGGGCg -5'
26270 3' -56.1 NC_005345.2 + 41893 0.68 0.547926
Target:  5'- gGCGACGCUUgucgguucGGCcGcCCGGUCCCcgGCa -3'
miRNA:   3'- -UGCUGUGGAaa------CUGuC-GGCCAGGG--CG- -5'
26270 3' -56.1 NC_005345.2 + 41838 0.68 0.53724
Target:  5'- uCGACGCCgucgcaccGCGGCUcGUCCUGCg -3'
miRNA:   3'- uGCUGUGGaaac----UGUCGGcCAGGGCG- -5'
26270 3' -56.1 NC_005345.2 + 24957 0.68 0.53724
Target:  5'- uCGGCcCCgacgGGCGGCCGGUCgaGUg -3'
miRNA:   3'- uGCUGuGGaaa-CUGUCGGCCAGggCG- -5'
26270 3' -56.1 NC_005345.2 + 19141 0.68 0.526627
Target:  5'- gGCGACcucgGCCgg-GACGucgucGCCGGgCCCGUa -3'
miRNA:   3'- -UGCUG----UGGaaaCUGU-----CGGCCaGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.