miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26271 3' -62 NC_005345.2 + 37457 0.67 0.310884
Target:  5'- uCGGCCGUcGAUCCGCcuGCagCGCGgGCGa -3'
miRNA:   3'- -GCUGGCA-CUGGGUGucCG--GCGCgCGU- -5'
26271 3' -62 NC_005345.2 + 17256 0.67 0.318334
Target:  5'- cCGACCGggcggcaGGCgCCGCGguccuGGuCUGCGCGCGg -3'
miRNA:   3'- -GCUGGCa------CUG-GGUGU-----CC-GGCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 24296 0.67 0.289333
Target:  5'- gCGuCCGUcACgCCGCGGGaCCGCuuGCGCGa -3'
miRNA:   3'- -GCuGGCAcUG-GGUGUCC-GGCG--CGCGU- -5'
26271 3' -62 NC_005345.2 + 21364 0.67 0.296384
Target:  5'- -cGCCacaucacGGCCUGCAGGCCGgUGCGCGg -3'
miRNA:   3'- gcUGGca-----CUGGGUGUCCGGC-GCGCGU- -5'
26271 3' -62 NC_005345.2 + 43868 0.67 0.325917
Target:  5'- uCGGCCGgGACuCCGC-GGCggaGCGCGUc -3'
miRNA:   3'- -GCUGGCaCUG-GGUGuCCGg--CGCGCGu -5'
26271 3' -62 NC_005345.2 + 35257 0.67 0.318334
Target:  5'- gCGAUCGUGcucACCCugAaGGCUGUgggagcagGCGCAa -3'
miRNA:   3'- -GCUGGCAC---UGGGugU-CCGGCG--------CGCGU- -5'
26271 3' -62 NC_005345.2 + 27558 0.67 0.310884
Target:  5'- uCGGCuCGUcgGACCCcgGC-GGCCGgGCGCc -3'
miRNA:   3'- -GCUG-GCA--CUGGG--UGuCCGGCgCGCGu -5'
26271 3' -62 NC_005345.2 + 37823 0.68 0.262448
Target:  5'- aCGGCCGgaacGGCCCGgGGGCCcugacUGUGCGg -3'
miRNA:   3'- -GCUGGCa---CUGGGUgUCCGGc----GCGCGU- -5'
26271 3' -62 NC_005345.2 + 18268 0.68 0.282415
Target:  5'- cCGcGCCGUcGCCCGCAcccGGagcacCCGCGCGCu -3'
miRNA:   3'- -GC-UGGCAcUGGGUGU---CC-----GGCGCGCGu -5'
26271 3' -62 NC_005345.2 + 46076 0.68 0.262448
Target:  5'- gCGGCCG-GGgCCGCcgGGGCCuGCGCGg- -3'
miRNA:   3'- -GCUGGCaCUgGGUG--UCCGG-CGCGCgu -5'
26271 3' -62 NC_005345.2 + 31863 0.68 0.249784
Target:  5'- cCGGCCGacaaGACCCGCgcgcagaccAGGaCCGCgGCGCc -3'
miRNA:   3'- -GCUGGCa---CUGGGUG---------UCC-GGCG-CGCGu -5'
26271 3' -62 NC_005345.2 + 17916 0.68 0.249784
Target:  5'- cCGACCccgGACCCGCcguacacccGGCCGCacccggguGCGCAc -3'
miRNA:   3'- -GCUGGca-CUGGGUGu--------CCGGCG--------CGCGU- -5'
26271 3' -62 NC_005345.2 + 16620 0.68 0.255419
Target:  5'- gCGGcCCG-GACCCGCgcagaucGGGCCGCcCGCc -3'
miRNA:   3'- -GCU-GGCaCUGGGUG-------UCCGGCGcGCGu -5'
26271 3' -62 NC_005345.2 + 11709 0.68 0.282415
Target:  5'- aCGGCC--GACCaGCGGGCCGCcgccGCGUAc -3'
miRNA:   3'- -GCUGGcaCUGGgUGUCCGGCG----CGCGU- -5'
26271 3' -62 NC_005345.2 + 34038 0.68 0.249784
Target:  5'- gGACCGUccgGAUCgACGgcgagaucagcGGCCGCGCGUu -3'
miRNA:   3'- gCUGGCA---CUGGgUGU-----------CCGGCGCGCGu -5'
26271 3' -62 NC_005345.2 + 17455 0.69 0.231739
Target:  5'- uCGAgCGUGaacGCCCaACGGGCUGCGCc-- -3'
miRNA:   3'- -GCUgGCAC---UGGG-UGUCCGGCGCGcgu -5'
26271 3' -62 NC_005345.2 + 3308 0.69 0.220329
Target:  5'- aCGAUCGUcGCCCGCGccGCCGcCGUGCAc -3'
miRNA:   3'- -GCUGGCAcUGGGUGUc-CGGC-GCGCGU- -5'
26271 3' -62 NC_005345.2 + 7572 0.69 0.214805
Target:  5'- aCGACCGagcacGCCCGCGagcacGGCgagCGCGCGCAc -3'
miRNA:   3'- -GCUGGCac---UGGGUGU-----CCG---GCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 27780 0.69 0.220329
Target:  5'- gCGcACCG--GCCUGCAGGCCGUgaugugGCGCAa -3'
miRNA:   3'- -GC-UGGCacUGGGUGUCCGGCG------CGCGU- -5'
26271 3' -62 NC_005345.2 + 18157 0.69 0.231739
Target:  5'- aGGCCG-GACCgGgCGGGCCGaucaccucgaacCGCGCGc -3'
miRNA:   3'- gCUGGCaCUGGgU-GUCCGGC------------GCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.