miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26271 3' -62 NC_005345.2 + 37948 0.66 0.357579
Target:  5'- uGcCCGUG--CCACAGGCCG-GCGUc -3'
miRNA:   3'- gCuGGCACugGGUGUCCGGCgCGCGu -5'
26271 3' -62 NC_005345.2 + 42440 0.66 0.357579
Target:  5'- -cACCGUG-CCCGCcGGCUGCuCGUg -3'
miRNA:   3'- gcUGGCACuGGGUGuCCGGCGcGCGu -5'
26271 3' -62 NC_005345.2 + 48624 0.66 0.365825
Target:  5'- uCGuguuCCGcGGCCCACAGGgCG-GCGUc -3'
miRNA:   3'- -GCu---GGCaCUGGGUGUCCgGCgCGCGu -5'
26271 3' -62 NC_005345.2 + 34590 0.66 0.365825
Target:  5'- aCGGCCG-GGCCCGugccguacCGGGCgaggagccaGCGUGCGg -3'
miRNA:   3'- -GCUGGCaCUGGGU--------GUCCGg--------CGCGCGU- -5'
26271 3' -62 NC_005345.2 + 8296 0.66 0.373357
Target:  5'- -cGCCGUGcuguuggGCgCCAU-GGCgGCGCGCAg -3'
miRNA:   3'- gcUGGCAC-------UG-GGUGuCCGgCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 6992 0.66 0.357579
Target:  5'- uGGCCGggcGCCgACAGGCaGCGuCGCc -3'
miRNA:   3'- gCUGGCac-UGGgUGUCCGgCGC-GCGu -5'
26271 3' -62 NC_005345.2 + 1675 0.66 0.356762
Target:  5'- -cGCUGUGcugcaucGCCCACAGGUCGC-CGaCAg -3'
miRNA:   3'- gcUGGCAC-------UGGGUGUCCGGCGcGC-GU- -5'
26271 3' -62 NC_005345.2 + 17656 0.66 0.341483
Target:  5'- aCGACCGUG-UUCGCgGGGCCGCcgaucCGCu -3'
miRNA:   3'- -GCUGGCACuGGGUG-UCCGGCGc----GCGu -5'
26271 3' -62 NC_005345.2 + 41798 0.66 0.349465
Target:  5'- cCGGCUGcGcCaCCGCGGGCCacaccGCGUGCGa -3'
miRNA:   3'- -GCUGGCaCuG-GGUGUCCGG-----CGCGCGU- -5'
26271 3' -62 NC_005345.2 + 28621 0.66 0.349465
Target:  5'- cCGGgCGUGuCgCCGCAGGCCGaucccgGgGCAg -3'
miRNA:   3'- -GCUgGCACuG-GGUGUCCGGCg-----CgCGU- -5'
26271 3' -62 NC_005345.2 + 25488 0.67 0.296384
Target:  5'- cCGGCCGcGACCCugguCGGcGCCGUcCGCc -3'
miRNA:   3'- -GCUGGCaCUGGGu---GUC-CGGCGcGCGu -5'
26271 3' -62 NC_005345.2 + 43868 0.67 0.325917
Target:  5'- uCGGCCGgGACuCCGC-GGCggaGCGCGUc -3'
miRNA:   3'- -GCUGGCaCUG-GGUGuCCGg--CGCGCGu -5'
26271 3' -62 NC_005345.2 + 22058 0.67 0.296384
Target:  5'- cCGACCGcggugGGuCCgGCAcaCCGCGCGCAa -3'
miRNA:   3'- -GCUGGCa----CU-GGgUGUccGGCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 30441 0.67 0.303567
Target:  5'- cCGACCGggcacACCCccgauccggGCAcGCUGCGCGCGa -3'
miRNA:   3'- -GCUGGCac---UGGG---------UGUcCGGCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 37457 0.67 0.310884
Target:  5'- uCGGCCGUcGAUCCGCcuGCagCGCGgGCGa -3'
miRNA:   3'- -GCUGGCA-CUGGGUGucCG--GCGCgCGU- -5'
26271 3' -62 NC_005345.2 + 23945 0.67 0.296384
Target:  5'- cCGGCCGggggUGAUucaCCGCGGGCUGCuGuCGCGg -3'
miRNA:   3'- -GCUGGC----ACUG---GGUGUCCGGCG-C-GCGU- -5'
26271 3' -62 NC_005345.2 + 21364 0.67 0.296384
Target:  5'- -cGCCacaucacGGCCUGCAGGCCGgUGCGCGg -3'
miRNA:   3'- gcUGGca-----CUGGGUGUCCGGC-GCGCGU- -5'
26271 3' -62 NC_005345.2 + 24296 0.67 0.289333
Target:  5'- gCGuCCGUcACgCCGCGGGaCCGCuuGCGCGa -3'
miRNA:   3'- -GCuGGCAcUG-GGUGUCC-GGCG--CGCGU- -5'
26271 3' -62 NC_005345.2 + 35257 0.67 0.318334
Target:  5'- gCGAUCGUGcucACCCugAaGGCUGUgggagcagGCGCAa -3'
miRNA:   3'- -GCUGGCAC---UGGGugU-CCGGCG--------CGCGU- -5'
26271 3' -62 NC_005345.2 + 27131 0.67 0.289333
Target:  5'- gGACCGUccggcgGGCCCgGCAuGCCGCcGUGCGg -3'
miRNA:   3'- gCUGGCA------CUGGG-UGUcCGGCG-CGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.