miRNA display CGI


Results 1 - 20 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26271 3' -62 NC_005345.2 + 30503 0.66 0.3742
Target:  5'- -uGCCGgacagcGACCCGCGGGCgaGgGUGCu -3'
miRNA:   3'- gcUGGCa-----CUGGGUGUCCGg-CgCGCGu -5'
26271 3' -62 NC_005345.2 + 28621 0.66 0.349465
Target:  5'- cCGGgCGUGuCgCCGCAGGCCGaucccgGgGCAg -3'
miRNA:   3'- -GCUgGCACuG-GGUGUCCGGCg-----CgCGU- -5'
26271 3' -62 NC_005345.2 + 17656 0.66 0.341483
Target:  5'- aCGACCGUG-UUCGCgGGGCCGCcgaucCGCu -3'
miRNA:   3'- -GCUGGCACuGGGUG-UCCGGCGc----GCGu -5'
26271 3' -62 NC_005345.2 + 44207 0.66 0.341483
Target:  5'- gGucuCCGUGACcgCCACccGGCCGgaGCGCAc -3'
miRNA:   3'- gCu--GGCACUG--GGUGu-CCGGCg-CGCGU- -5'
26271 3' -62 NC_005345.2 + 21969 0.66 0.333634
Target:  5'- aCGGCCGgcgguaGACCUccuccgGCGGGaCGCcGCGCAg -3'
miRNA:   3'- -GCUGGCa-----CUGGG------UGUCCgGCG-CGCGU- -5'
26271 3' -62 NC_005345.2 + 3581 0.66 0.332856
Target:  5'- cCGGCCGcaaccGGCCCGCcccgaccucGGCCGCugucgcccugcucGCGCAg -3'
miRNA:   3'- -GCUGGCa----CUGGGUGu--------CCGGCG-------------CGCGU- -5'
26271 3' -62 NC_005345.2 + 34064 0.66 0.336757
Target:  5'- gCGGCgGUaGGCCUgaucacgcaggcgcuGCAGGCCG-GCGCc -3'
miRNA:   3'- -GCUGgCA-CUGGG---------------UGUCCGGCgCGCGu -5'
26271 3' -62 NC_005345.2 + 11086 0.66 0.341483
Target:  5'- gCGGCCuGUGGgUCACggucggaaguuGGGUCGCcGCGCAg -3'
miRNA:   3'- -GCUGG-CACUgGGUG-----------UCCGGCG-CGCGU- -5'
26271 3' -62 NC_005345.2 + 3273 0.66 0.341483
Target:  5'- aGACCGUGAUCgACGGcGUCGgGCu-- -3'
miRNA:   3'- gCUGGCACUGGgUGUC-CGGCgCGcgu -5'
26271 3' -62 NC_005345.2 + 41798 0.66 0.349465
Target:  5'- cCGGCUGcGcCaCCGCGGGCCacaccGCGUGCGa -3'
miRNA:   3'- -GCUGGCaCuG-GGUGUCCGG-----CGCGCGU- -5'
26271 3' -62 NC_005345.2 + 1675 0.66 0.356762
Target:  5'- -cGCUGUGcugcaucGCCCACAGGUCGC-CGaCAg -3'
miRNA:   3'- gcUGGCAC-------UGGGUGUCCGGCGcGC-GU- -5'
26271 3' -62 NC_005345.2 + 6992 0.66 0.357579
Target:  5'- uGGCCGggcGCCgACAGGCaGCGuCGCc -3'
miRNA:   3'- gCUGGCac-UGGgUGUCCGgCGC-GCGu -5'
26271 3' -62 NC_005345.2 + 8296 0.66 0.373357
Target:  5'- -cGCCGUGcuguuggGCgCCAU-GGCgGCGCGCAg -3'
miRNA:   3'- gcUGGCAC-------UG-GGUGuCCGgCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 34590 0.66 0.365825
Target:  5'- aCGGCCG-GGCCCGugccguacCGGGCgaggagccaGCGUGCGg -3'
miRNA:   3'- -GCUGGCaCUGGGU--------GUCCGg--------CGCGCGU- -5'
26271 3' -62 NC_005345.2 + 48624 0.66 0.365825
Target:  5'- uCGuguuCCGcGGCCCACAGGgCG-GCGUc -3'
miRNA:   3'- -GCu---GGCaCUGGGUGUCCgGCgCGCGu -5'
26271 3' -62 NC_005345.2 + 42440 0.66 0.357579
Target:  5'- -cACCGUG-CCCGCcGGCUGCuCGUg -3'
miRNA:   3'- gcUGGCACuGGGUGuCCGGCGcGCGu -5'
26271 3' -62 NC_005345.2 + 37948 0.66 0.357579
Target:  5'- uGcCCGUG--CCACAGGCCG-GCGUc -3'
miRNA:   3'- gCuGGCACugGGUGUCCGGCgCGCGu -5'
26271 3' -62 NC_005345.2 + 17882 0.66 0.357579
Target:  5'- -cGCCGUGGCguagucgccgaUCACGGcGCCGCGCaCAc -3'
miRNA:   3'- gcUGGCACUG-----------GGUGUC-CGGCGCGcGU- -5'
26271 3' -62 NC_005345.2 + 5734 0.66 0.357579
Target:  5'- cCGGCCGUG-UUC-CGGGCCGCagccgaggacuGCGCc -3'
miRNA:   3'- -GCUGGCACuGGGuGUCCGGCG-----------CGCGu -5'
26271 3' -62 NC_005345.2 + 40754 0.66 0.357579
Target:  5'- uCGACCGgcagcGGCUCGuCGGGCCGgucggccgGCGCGg -3'
miRNA:   3'- -GCUGGCa----CUGGGU-GUCCGGCg-------CGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.