miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26271 3' -62 NC_005345.2 + 316 0.66 0.364994
Target:  5'- uCGACCcucgcucGUGACCCAuCAcGGuCUGCGUGUc -3'
miRNA:   3'- -GCUGG-------CACUGGGU-GU-CC-GGCGCGCGu -5'
26271 3' -62 NC_005345.2 + 1193 0.71 0.153257
Target:  5'- gCGGCuCGgcaguccGGCCCGCGGGCCacgcCGCGCGg -3'
miRNA:   3'- -GCUG-GCa------CUGGGUGUCCGGc---GCGCGU- -5'
26271 3' -62 NC_005345.2 + 1675 0.66 0.356762
Target:  5'- -cGCUGUGcugcaucGCCCACAGGUCGC-CGaCAg -3'
miRNA:   3'- gcUGGCAC-------UGGGUGUCCGGCGcGC-GU- -5'
26271 3' -62 NC_005345.2 + 2044 0.7 0.204114
Target:  5'- gGGcCCGgcgcGGCCCgGCGGGCCGCG-GCGa -3'
miRNA:   3'- gCU-GGCa---CUGGG-UGUCCGGCGCgCGU- -5'
26271 3' -62 NC_005345.2 + 2177 0.66 0.349465
Target:  5'- uGACCGUGGCgggugcaaCGCcgauGG-CGCGCGCGa -3'
miRNA:   3'- gCUGGCACUGg-------GUGu---CCgGCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 2368 0.7 0.184113
Target:  5'- aCGGCgCGUGACCUcCccGUCGCGCGCc -3'
miRNA:   3'- -GCUG-GCACUGGGuGucCGGCGCGCGu -5'
26271 3' -62 NC_005345.2 + 2664 0.74 0.102411
Target:  5'- gCGGCCGacuUGAUCgGCgAGGCCGCGgGCGu -3'
miRNA:   3'- -GCUGGC---ACUGGgUG-UCCGGCGCgCGU- -5'
26271 3' -62 NC_005345.2 + 3273 0.66 0.341483
Target:  5'- aGACCGUGAUCgACGGcGUCGgGCu-- -3'
miRNA:   3'- gCUGGCACUGGgUGUC-CGGCgCGcgu -5'
26271 3' -62 NC_005345.2 + 3308 0.69 0.220329
Target:  5'- aCGAUCGUcGCCCGCGccGCCGcCGUGCAc -3'
miRNA:   3'- -GCUGGCAcUGGGUGUc-CGGC-GCGCGU- -5'
26271 3' -62 NC_005345.2 + 3581 0.66 0.332856
Target:  5'- cCGGCCGcaaccGGCCCGCcccgaccucGGCCGCugucgcccugcucGCGCAg -3'
miRNA:   3'- -GCUGGCa----CUGGGUGu--------CCGGCG-------------CGCGU- -5'
26271 3' -62 NC_005345.2 + 3604 0.71 0.153257
Target:  5'- uCGGCCcacagGUGAcCCCACGGcCCGCGcCGCAg -3'
miRNA:   3'- -GCUGG-----CACU-GGGUGUCcGGCGC-GCGU- -5'
26271 3' -62 NC_005345.2 + 5734 0.66 0.357579
Target:  5'- cCGGCCGUG-UUC-CGGGCCGCagccgaggacuGCGCc -3'
miRNA:   3'- -GCUGGCACuGGGuGUCCGGCG-----------CGCGu -5'
26271 3' -62 NC_005345.2 + 6992 0.66 0.357579
Target:  5'- uGGCCGggcGCCgACAGGCaGCGuCGCc -3'
miRNA:   3'- gCUGGCac-UGGgUGUCCGgCGC-GCGu -5'
26271 3' -62 NC_005345.2 + 7572 0.69 0.214805
Target:  5'- aCGACCGagcacGCCCGCGagcacGGCgagCGCGCGCAc -3'
miRNA:   3'- -GCUGGCac---UGGGUGU-----CCG---GCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 8219 0.69 0.23408
Target:  5'- uCGGCCGUgcuguccggguagacGACCCGCAGGaCGUcgccggguucgaGCGCGg -3'
miRNA:   3'- -GCUGGCA---------------CUGGGUGUCCgGCG------------CGCGU- -5'
26271 3' -62 NC_005345.2 + 8296 0.66 0.373357
Target:  5'- -cGCCGUGcuguuggGCgCCAU-GGCgGCGCGCAg -3'
miRNA:   3'- gcUGGCAC-------UG-GGUGuCCGgCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 9264 0.69 0.225973
Target:  5'- gCGGCCGacaaGuCCCGCAugucGGCCGCgGCGUAc -3'
miRNA:   3'- -GCUGGCa---CuGGGUGU----CCGGCG-CGCGU- -5'
26271 3' -62 NC_005345.2 + 9495 0.74 0.105238
Target:  5'- aGACCGagUGGCaguCGCGGGCCcuguGCGCGCAg -3'
miRNA:   3'- gCUGGC--ACUGg--GUGUCCGG----CGCGCGU- -5'
26271 3' -62 NC_005345.2 + 9591 0.7 0.184113
Target:  5'- aCGACCGgccggGACCgGCcgcgGGGCCG-GUGCAc -3'
miRNA:   3'- -GCUGGCa----CUGGgUG----UCCGGCgCGCGU- -5'
26271 3' -62 NC_005345.2 + 9688 0.67 0.289333
Target:  5'- cCGGCUGcaGGCCgaucaGCGGGCCGcCGCGUg -3'
miRNA:   3'- -GCUGGCa-CUGGg----UGUCCGGC-GCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.