miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26271 3' -62 NC_005345.2 + 34263 0.77 0.062339
Target:  5'- uCGACC-UGACCCuugACcGGCUGCGCGCGg -3'
miRNA:   3'- -GCUGGcACUGGG---UGuCCGGCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 17916 0.68 0.249784
Target:  5'- cCGACCccgGACCCGCcguacacccGGCCGCacccggguGCGCAc -3'
miRNA:   3'- -GCUGGca-CUGGGUGu--------CCGGCG--------CGCGU- -5'
26271 3' -62 NC_005345.2 + 37823 0.68 0.262448
Target:  5'- aCGGCCGgaacGGCCCGgGGGCCcugacUGUGCGg -3'
miRNA:   3'- -GCUGGCa---CUGGGUgUCCGGc----GCGCGU- -5'
26271 3' -62 NC_005345.2 + 26920 0.66 0.3742
Target:  5'- cCGACCGguacGACgCGCugucGGGuuGCuGCGCGa -3'
miRNA:   3'- -GCUGGCa---CUGgGUG----UCCggCG-CGCGU- -5'
26271 3' -62 NC_005345.2 + 26787 0.72 0.141527
Target:  5'- gGAUCGUGGCCgGC--GCCGCGuCGCAg -3'
miRNA:   3'- gCUGGCACUGGgUGucCGGCGC-GCGU- -5'
26271 3' -62 NC_005345.2 + 11459 0.71 0.164561
Target:  5'- gGACUGgcGGCCCACggccgacgacaucaGGGCCGCGCagGCGg -3'
miRNA:   3'- gCUGGCa-CUGGGUG--------------UCCGGCGCG--CGU- -5'
26271 3' -62 NC_005345.2 + 2368 0.7 0.184113
Target:  5'- aCGGCgCGUGACCUcCccGUCGCGCGCc -3'
miRNA:   3'- -GCUG-GCACUGGGuGucCGGCGCGCGu -5'
26271 3' -62 NC_005345.2 + 18994 0.7 0.184113
Target:  5'- uGGCCGgcgggacGACCUcgACGGGUgGCGCGCc -3'
miRNA:   3'- gCUGGCa------CUGGG--UGUCCGgCGCGCGu -5'
26271 3' -62 NC_005345.2 + 7572 0.69 0.214805
Target:  5'- aCGACCGagcacGCCCGCGagcacGGCgagCGCGCGCAc -3'
miRNA:   3'- -GCUGGCac---UGGGUGU-----CCG---GCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 31510 0.69 0.231739
Target:  5'- aCGGUCGUGACCgACcGGCCGCGUc-- -3'
miRNA:   3'- -GCUGGCACUGGgUGuCCGGCGCGcgu -5'
26271 3' -62 NC_005345.2 + 3308 0.69 0.220329
Target:  5'- aCGAUCGUcGCCCGCGccGCCGcCGUGCAc -3'
miRNA:   3'- -GCUGGCAcUGGGUGUc-CGGC-GCGCGU- -5'
26271 3' -62 NC_005345.2 + 2044 0.7 0.204114
Target:  5'- gGGcCCGgcgcGGCCCgGCGGGCCGCG-GCGa -3'
miRNA:   3'- gCU-GGCa---CUGGG-UGUCCGGCGCgCGU- -5'
26271 3' -62 NC_005345.2 + 9495 0.74 0.105238
Target:  5'- aGACCGagUGGCaguCGCGGGCCcuguGCGCGCAg -3'
miRNA:   3'- gCUGGC--ACUGg--GUGUCCGG----CGCGCGU- -5'
26271 3' -62 NC_005345.2 + 24487 0.69 0.224267
Target:  5'- aCGGCCGgucccgGGCCCGCGGGauccuggucgaccaCCGCGagGCGc -3'
miRNA:   3'- -GCUGGCa-----CUGGGUGUCC--------------GGCGCg-CGU- -5'
26271 3' -62 NC_005345.2 + 45563 0.73 0.111112
Target:  5'- gGGCCGacGACCCGCAGG-UGCGCGaCAc -3'
miRNA:   3'- gCUGGCa-CUGGGUGUCCgGCGCGC-GU- -5'
26271 3' -62 NC_005345.2 + 31651 0.7 0.204114
Target:  5'- gCGACCGgcGGCCCGCAGuuccuucccgacGCCGagacagGCGCAg -3'
miRNA:   3'- -GCUGGCa-CUGGGUGUC------------CGGCg-----CGCGU- -5'
26271 3' -62 NC_005345.2 + 9264 0.69 0.225973
Target:  5'- gCGGCCGacaaGuCCCGCAugucGGCCGCgGCGUAc -3'
miRNA:   3'- -GCUGGCa---CuGGGUGU----CCGGCG-CGCGU- -5'
26271 3' -62 NC_005345.2 + 31863 0.68 0.249784
Target:  5'- cCGGCCGacaaGACCCGCgcgcagaccAGGaCCGCgGCGCc -3'
miRNA:   3'- -GCUGGCa---CUGGGUG---------UCC-GGCG-CGCGu -5'
26271 3' -62 NC_005345.2 + 20203 0.72 0.137803
Target:  5'- uCGugCGUGucCCCAUAGacccGCCGCaGCGCAu -3'
miRNA:   3'- -GCugGCACu-GGGUGUC----CGGCG-CGCGU- -5'
26271 3' -62 NC_005345.2 + 47946 0.71 0.167612
Target:  5'- gCGG-CGUGGCCCGCGGGCCGgacugccgagccgccCGUGUg -3'
miRNA:   3'- -GCUgGCACUGGGUGUCCGGC---------------GCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.