miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26271 3' -62 NC_005345.2 + 38065 1.08 0.000242
Target:  5'- cCGACCGUGACCCACAGGCCGCGCGCAg -3'
miRNA:   3'- -GCUGGCACUGGGUGUCCGGCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 17534 0.8 0.034564
Target:  5'- gGACCGUgucgccaugcGAUCCGCGGGCCGCGCcgaGCAg -3'
miRNA:   3'- gCUGGCA----------CUGGGUGUCCGGCGCG---CGU- -5'
26271 3' -62 NC_005345.2 + 34263 0.77 0.062339
Target:  5'- uCGACC-UGACCCuugACcGGCUGCGCGCGg -3'
miRNA:   3'- -GCUGGcACUGGG---UGuCCGGCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 28917 0.76 0.069672
Target:  5'- uCGAUCGUG-CCaCGCAGGCgaUGCGCGCGg -3'
miRNA:   3'- -GCUGGCACuGG-GUGUCCG--GCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 45825 0.76 0.07571
Target:  5'- gCGACCGUGACgUGCAcGGCgGCgGCGCGg -3'
miRNA:   3'- -GCUGGCACUGgGUGU-CCGgCG-CGCGU- -5'
26271 3' -62 NC_005345.2 + 32889 0.74 0.096971
Target:  5'- aGACCG--GCCCGCAGGCUGgGgGCGc -3'
miRNA:   3'- gCUGGCacUGGGUGUCCGGCgCgCGU- -5'
26271 3' -62 NC_005345.2 + 2664 0.74 0.102411
Target:  5'- gCGGCCGacuUGAUCgGCgAGGCCGCGgGCGu -3'
miRNA:   3'- -GCUGGC---ACUGGgUG-UCCGGCGCgCGU- -5'
26271 3' -62 NC_005345.2 + 9495 0.74 0.105238
Target:  5'- aGACCGagUGGCaguCGCGGGCCcuguGCGCGCAg -3'
miRNA:   3'- gCUGGC--ACUGg--GUGUCCGG----CGCGCGU- -5'
26271 3' -62 NC_005345.2 + 27197 0.74 0.105238
Target:  5'- gGGCCGUGAUCggcaGCGGGUCG-GCGCAg -3'
miRNA:   3'- gCUGGCACUGGg---UGUCCGGCgCGCGU- -5'
26271 3' -62 NC_005345.2 + 45563 0.73 0.111112
Target:  5'- gGGCCGacGACCCGCAGG-UGCGCGaCAc -3'
miRNA:   3'- gCUGGCa-CUGGGUGUCCgGCGCGC-GU- -5'
26271 3' -62 NC_005345.2 + 47099 0.73 0.114163
Target:  5'- -cGCCGcGGCCCGcCGGGCCGCGC-CGg -3'
miRNA:   3'- gcUGGCaCUGGGU-GUCCGGCGCGcGU- -5'
26271 3' -62 NC_005345.2 + 20203 0.72 0.137803
Target:  5'- uCGugCGUGucCCCAUAGacccGCCGCaGCGCAu -3'
miRNA:   3'- -GCugGCACu-GGGUGUC----CGGCG-CGCGU- -5'
26271 3' -62 NC_005345.2 + 19262 0.72 0.141527
Target:  5'- gGACCGggauGCCgACGgcGGCCGCGUGCGu -3'
miRNA:   3'- gCUGGCac--UGGgUGU--CCGGCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 26787 0.72 0.141527
Target:  5'- gGAUCGUGGCCgGC--GCCGCGuCGCAg -3'
miRNA:   3'- gCUGGCACUGGgUGucCGGCGC-GCGU- -5'
26271 3' -62 NC_005345.2 + 45693 0.72 0.145343
Target:  5'- gCGACCGUGGacagguCCCgGCGGGCgggggucugCGUGCGCAg -3'
miRNA:   3'- -GCUGGCACU------GGG-UGUCCG---------GCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 18215 0.72 0.149252
Target:  5'- gCGGCCGUGcACCgugaGCGGGCCGCcgGCGg- -3'
miRNA:   3'- -GCUGGCAC-UGGg---UGUCCGGCG--CGCgu -5'
26271 3' -62 NC_005345.2 + 3604 0.71 0.153257
Target:  5'- uCGGCCcacagGUGAcCCCACGGcCCGCGcCGCAg -3'
miRNA:   3'- -GCUGG-----CACU-GGGUGUCcGGCGC-GCGU- -5'
26271 3' -62 NC_005345.2 + 1193 0.71 0.153257
Target:  5'- gCGGCuCGgcaguccGGCCCGCGGGCCacgcCGCGCGg -3'
miRNA:   3'- -GCUG-GCa------CUGGGUGUCCGGc---GCGCGU- -5'
26271 3' -62 NC_005345.2 + 11459 0.71 0.164561
Target:  5'- gGACUGgcGGCCCACggccgacgacaucaGGGCCGCGCagGCGg -3'
miRNA:   3'- gCUGGCa-CUGGGUG--------------UCCGGCGCG--CGU- -5'
26271 3' -62 NC_005345.2 + 47946 0.71 0.167612
Target:  5'- gCGG-CGUGGCCCGCGGGCCGgacugccgagccgccCGUGUg -3'
miRNA:   3'- -GCUgGCACUGGGUGUCCGGC---------------GCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.