Results 21 - 40 of 95 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
26271 | 3' | -62 | NC_005345.2 | + | 11459 | 0.71 | 0.164561 |
Target: 5'- gGACUGgcGGCCCACggccgacgacaucaGGGCCGCGCagGCGg -3' miRNA: 3'- gCUGGCa-CUGGGUG--------------UCCGGCGCG--CGU- -5' |
|||||||
26271 | 3' | -62 | NC_005345.2 | + | 37694 | 0.7 | 0.198944 |
Target: 5'- uCGGCCGUGGgccgccaguCCUGCGGGaUCGCGCuGCGg -3' miRNA: 3'- -GCUGGCACU---------GGGUGUCC-GGCGCG-CGU- -5' |
|||||||
26271 | 3' | -62 | NC_005345.2 | + | 10285 | 0.7 | 0.209401 |
Target: 5'- gCGGCCGgcgacaccgGACCCgaGCGGGaaGCGgGCAg -3' miRNA: 3'- -GCUGGCa--------CUGGG--UGUCCggCGCgCGU- -5' |
|||||||
26271 | 3' | -62 | NC_005345.2 | + | 2368 | 0.7 | 0.184113 |
Target: 5'- aCGGCgCGUGACCUcCccGUCGCGCGCc -3' miRNA: 3'- -GCUG-GCACUGGGuGucCGGCGCGCGu -5' |
|||||||
26271 | 3' | -62 | NC_005345.2 | + | 18994 | 0.7 | 0.184113 |
Target: 5'- uGGCCGgcgggacGACCUcgACGGGUgGCGCGCc -3' miRNA: 3'- gCUGGCa------CUGGG--UGUCCGgCGCGCGu -5' |
|||||||
26271 | 3' | -62 | NC_005345.2 | + | 31651 | 0.7 | 0.204114 |
Target: 5'- gCGACCGgcGGCCCGCAGuuccuucccgacGCCGagacagGCGCAg -3' miRNA: 3'- -GCUGGCa-CUGGGUGUC------------CGGCg-----CGCGU- -5' |
|||||||
26271 | 3' | -62 | NC_005345.2 | + | 2044 | 0.7 | 0.204114 |
Target: 5'- gGGcCCGgcgcGGCCCgGCGGGCCGCG-GCGa -3' miRNA: 3'- gCU-GGCa---CUGGG-UGUCCGGCGCgCGU- -5' |
|||||||
26271 | 3' | -62 | NC_005345.2 | + | 9591 | 0.7 | 0.184113 |
Target: 5'- aCGACCGgccggGACCgGCcgcgGGGCCG-GUGCAc -3' miRNA: 3'- -GCUGGCa----CUGGgUG----UCCGGCgCGCGU- -5' |
|||||||
26271 | 3' | -62 | NC_005345.2 | + | 24487 | 0.69 | 0.224267 |
Target: 5'- aCGGCCGgucccgGGCCCGCGGGauccuggucgaccaCCGCGagGCGc -3' miRNA: 3'- -GCUGGCa-----CUGGGUGUCC--------------GGCGCg-CGU- -5' |
|||||||
26271 | 3' | -62 | NC_005345.2 | + | 7572 | 0.69 | 0.214805 |
Target: 5'- aCGACCGagcacGCCCGCGagcacGGCgagCGCGCGCAc -3' miRNA: 3'- -GCUGGCac---UGGGUGU-----CCG---GCGCGCGU- -5' |
|||||||
26271 | 3' | -62 | NC_005345.2 | + | 27780 | 0.69 | 0.220329 |
Target: 5'- gCGcACCG--GCCUGCAGGCCGUgaugugGCGCAa -3' miRNA: 3'- -GC-UGGCacUGGGUGUCCGGCG------CGCGU- -5' |
|||||||
26271 | 3' | -62 | NC_005345.2 | + | 38534 | 0.69 | 0.214805 |
Target: 5'- uCGAcCCG-GGCCgACcGGCCGCGcCGCu -3' miRNA: 3'- -GCU-GGCaCUGGgUGuCCGGCGC-GCGu -5' |
|||||||
26271 | 3' | -62 | NC_005345.2 | + | 31830 | 0.69 | 0.225973 |
Target: 5'- gCGugCGUGcACCCGCGgcGGgUGCgGCGCAc -3' miRNA: 3'- -GCugGCAC-UGGGUGU--CCgGCG-CGCGU- -5' |
|||||||
26271 | 3' | -62 | NC_005345.2 | + | 3308 | 0.69 | 0.220329 |
Target: 5'- aCGAUCGUcGCCCGCGccGCCGcCGUGCAc -3' miRNA: 3'- -GCUGGCAcUGGGUGUc-CGGC-GCGCGU- -5' |
|||||||
26271 | 3' | -62 | NC_005345.2 | + | 18157 | 0.69 | 0.231739 |
Target: 5'- aGGCCG-GACCgGgCGGGCCGaucaccucgaacCGCGCGc -3' miRNA: 3'- gCUGGCaCUGGgU-GUCCGGC------------GCGCGU- -5' |
|||||||
26271 | 3' | -62 | NC_005345.2 | + | 8219 | 0.69 | 0.23408 |
Target: 5'- uCGGCCGUgcuguccggguagacGACCCGCAGGaCGUcgccggguucgaGCGCGg -3' miRNA: 3'- -GCUGGCA---------------CUGGGUGUCCgGCG------------CGCGU- -5' |
|||||||
26271 | 3' | -62 | NC_005345.2 | + | 34499 | 0.69 | 0.24002 |
Target: 5'- cCGGCCG-GugCCgaggacgcggucgagGCGGGCCGCGgccuCGCGg -3' miRNA: 3'- -GCUGGCaCugGG---------------UGUCCGGCGC----GCGU- -5' |
|||||||
26271 | 3' | -62 | NC_005345.2 | + | 31510 | 0.69 | 0.231739 |
Target: 5'- aCGGUCGUGACCgACcGGCCGCGUc-- -3' miRNA: 3'- -GCUGGCACUGGgUGuCCGGCGCGcgu -5' |
|||||||
26271 | 3' | -62 | NC_005345.2 | + | 9264 | 0.69 | 0.225973 |
Target: 5'- gCGGCCGacaaGuCCCGCAugucGGCCGCgGCGUAc -3' miRNA: 3'- -GCUGGCa---CuGGGUGU----CCGGCG-CGCGU- -5' |
|||||||
26271 | 3' | -62 | NC_005345.2 | + | 17455 | 0.69 | 0.231739 |
Target: 5'- uCGAgCGUGaacGCCCaACGGGCUGCGCc-- -3' miRNA: 3'- -GCUgGCAC---UGGG-UGUCCGGCGCGcgu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home