miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26271 3' -62 NC_005345.2 + 37457 0.67 0.310884
Target:  5'- uCGGCCGUcGAUCCGCcuGCagCGCGgGCGa -3'
miRNA:   3'- -GCUGGCA-CUGGGUGucCG--GCGCgCGU- -5'
26271 3' -62 NC_005345.2 + 35257 0.67 0.318334
Target:  5'- gCGAUCGUGcucACCCugAaGGCUGUgggagcagGCGCAa -3'
miRNA:   3'- -GCUGGCAC---UGGGugU-CCGGCG--------CGCGU- -5'
26271 3' -62 NC_005345.2 + 34590 0.66 0.365825
Target:  5'- aCGGCCG-GGCCCGugccguacCGGGCgaggagccaGCGUGCGg -3'
miRNA:   3'- -GCUGGCaCUGGGU--------GUCCGg--------CGCGCGU- -5'
26271 3' -62 NC_005345.2 + 34499 0.69 0.24002
Target:  5'- cCGGCCG-GugCCgaggacgcggucgagGCGGGCCGCGgccuCGCGg -3'
miRNA:   3'- -GCUGGCaCugGG---------------UGUCCGGCGC----GCGU- -5'
26271 3' -62 NC_005345.2 + 34263 0.77 0.062339
Target:  5'- uCGACC-UGACCCuugACcGGCUGCGCGCGg -3'
miRNA:   3'- -GCUGGcACUGGG---UGuCCGGCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 34064 0.66 0.336757
Target:  5'- gCGGCgGUaGGCCUgaucacgcaggcgcuGCAGGCCG-GCGCc -3'
miRNA:   3'- -GCUGgCA-CUGGG---------------UGUCCGGCgCGCGu -5'
26271 3' -62 NC_005345.2 + 34038 0.68 0.249784
Target:  5'- gGACCGUccgGAUCgACGgcgagaucagcGGCCGCGCGUu -3'
miRNA:   3'- gCUGGCA---CUGGgUGU-----------CCGGCGCGCGu -5'
26271 3' -62 NC_005345.2 + 32889 0.74 0.096971
Target:  5'- aGACCG--GCCCGCAGGCUGgGgGCGc -3'
miRNA:   3'- gCUGGCacUGGGUGUCCGGCgCgCGU- -5'
26271 3' -62 NC_005345.2 + 31863 0.68 0.249784
Target:  5'- cCGGCCGacaaGACCCGCgcgcagaccAGGaCCGCgGCGCc -3'
miRNA:   3'- -GCUGGCa---CUGGGUG---------UCC-GGCG-CGCGu -5'
26271 3' -62 NC_005345.2 + 31830 0.69 0.225973
Target:  5'- gCGugCGUGcACCCGCGgcGGgUGCgGCGCAc -3'
miRNA:   3'- -GCugGCAC-UGGGUGU--CCgGCG-CGCGU- -5'
26271 3' -62 NC_005345.2 + 31651 0.7 0.204114
Target:  5'- gCGACCGgcGGCCCGCAGuuccuucccgacGCCGagacagGCGCAg -3'
miRNA:   3'- -GCUGGCa-CUGGGUGUC------------CGGCg-----CGCGU- -5'
26271 3' -62 NC_005345.2 + 31510 0.69 0.231739
Target:  5'- aCGGUCGUGACCgACcGGCCGCGUc-- -3'
miRNA:   3'- -GCUGGCACUGGgUGuCCGGCGCGcgu -5'
26271 3' -62 NC_005345.2 + 31182 0.66 0.365825
Target:  5'- aGGCCGcGGCCCgGCAGGCgGCcgaGCc -3'
miRNA:   3'- gCUGGCaCUGGG-UGUCCGgCGcg-CGu -5'
26271 3' -62 NC_005345.2 + 30801 0.66 0.357579
Target:  5'- cCGACUGgucGACCUcgaccCGGGCCGaCGuCGCGg -3'
miRNA:   3'- -GCUGGCa--CUGGGu----GUCCGGC-GC-GCGU- -5'
26271 3' -62 NC_005345.2 + 30503 0.66 0.3742
Target:  5'- -uGCCGgacagcGACCCGCGGGCgaGgGUGCu -3'
miRNA:   3'- gcUGGCa-----CUGGGUGUCCGg-CgCGCGu -5'
26271 3' -62 NC_005345.2 + 30441 0.67 0.303567
Target:  5'- cCGACCGggcacACCCccgauccggGCAcGCUGCGCGCGa -3'
miRNA:   3'- -GCUGGCac---UGGG---------UGUcCGGCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 29871 0.66 0.357579
Target:  5'- cCGGCUGUGgACgCACGcGGCCGC-CGUc -3'
miRNA:   3'- -GCUGGCAC-UGgGUGU-CCGGCGcGCGu -5'
26271 3' -62 NC_005345.2 + 28917 0.76 0.069672
Target:  5'- uCGAUCGUG-CCaCGCAGGCgaUGCGCGCGg -3'
miRNA:   3'- -GCUGGCACuGG-GUGUCCG--GCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 28621 0.66 0.349465
Target:  5'- cCGGgCGUGuCgCCGCAGGCCGaucccgGgGCAg -3'
miRNA:   3'- -GCUgGCACuG-GGUGUCCGGCg-----CgCGU- -5'
26271 3' -62 NC_005345.2 + 27780 0.69 0.220329
Target:  5'- gCGcACCG--GCCUGCAGGCCGUgaugugGCGCAa -3'
miRNA:   3'- -GC-UGGCacUGGGUGUCCGGCG------CGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.