miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26271 3' -62 NC_005345.2 + 28621 0.66 0.349465
Target:  5'- cCGGgCGUGuCgCCGCAGGCCGaucccgGgGCAg -3'
miRNA:   3'- -GCUgGCACuG-GGUGUCCGGCg-----CgCGU- -5'
26271 3' -62 NC_005345.2 + 10411 0.66 0.341483
Target:  5'- ---gCGUGACgCUguGCgAGGUCGCGCGCGa -3'
miRNA:   3'- gcugGCACUG-GG--UG-UCCGGCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 11086 0.66 0.341483
Target:  5'- gCGGCCuGUGGgUCACggucggaaguuGGGUCGCcGCGCAg -3'
miRNA:   3'- -GCUGG-CACUgGGUG-----------UCCGGCG-CGCGU- -5'
26271 3' -62 NC_005345.2 + 9721 0.66 0.341483
Target:  5'- -aGCCGc-GCCgCGCGGGCCGCGacCGCGc -3'
miRNA:   3'- gcUGGCacUGG-GUGUCCGGCGC--GCGU- -5'
26271 3' -62 NC_005345.2 + 3273 0.66 0.341483
Target:  5'- aGACCGUGAUCgACGGcGUCGgGCu-- -3'
miRNA:   3'- gCUGGCACUGGgUGUC-CGGCgCGcgu -5'
26271 3' -62 NC_005345.2 + 44207 0.66 0.341483
Target:  5'- gGucuCCGUGACcgCCACccGGCCGgaGCGCAc -3'
miRNA:   3'- gCu--GGCACUG--GGUGu-CCGGCg-CGCGU- -5'
26271 3' -62 NC_005345.2 + 17656 0.66 0.341483
Target:  5'- aCGACCGUG-UUCGCgGGGCCGCcgaucCGCu -3'
miRNA:   3'- -GCUGGCACuGGGUG-UCCGGCGc----GCGu -5'
26271 3' -62 NC_005345.2 + 34064 0.66 0.336757
Target:  5'- gCGGCgGUaGGCCUgaucacgcaggcgcuGCAGGCCG-GCGCc -3'
miRNA:   3'- -GCUGgCA-CUGGG---------------UGUCCGGCgCGCGu -5'
26271 3' -62 NC_005345.2 + 21969 0.66 0.333634
Target:  5'- aCGGCCGgcgguaGACCUccuccgGCGGGaCGCcGCGCAg -3'
miRNA:   3'- -GCUGGCa-----CUGGG------UGUCCgGCG-CGCGU- -5'
26271 3' -62 NC_005345.2 + 3581 0.66 0.332856
Target:  5'- cCGGCCGcaaccGGCCCGCcccgaccucGGCCGCugucgcccugcucGCGCAg -3'
miRNA:   3'- -GCUGGCa----CUGGGUGu--------CCGGCG-------------CGCGU- -5'
26271 3' -62 NC_005345.2 + 43868 0.67 0.325917
Target:  5'- uCGGCCGgGACuCCGC-GGCggaGCGCGUc -3'
miRNA:   3'- -GCUGGCaCUG-GGUGuCCGg--CGCGCGu -5'
26271 3' -62 NC_005345.2 + 10658 0.67 0.325917
Target:  5'- gGACCGcgGACCgGUGGGgCGCgGCGCGg -3'
miRNA:   3'- gCUGGCa-CUGGgUGUCCgGCG-CGCGU- -5'
26271 3' -62 NC_005345.2 + 35257 0.67 0.318334
Target:  5'- gCGAUCGUGcucACCCugAaGGCUGUgggagcagGCGCAa -3'
miRNA:   3'- -GCUGGCAC---UGGGugU-CCGGCG--------CGCGU- -5'
26271 3' -62 NC_005345.2 + 17256 0.67 0.318334
Target:  5'- cCGACCGggcggcaGGCgCCGCGguccuGGuCUGCGCGCGg -3'
miRNA:   3'- -GCUGGCa------CUG-GGUGU-----CC-GGCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 27558 0.67 0.310884
Target:  5'- uCGGCuCGUcgGACCCcgGC-GGCCGgGCGCc -3'
miRNA:   3'- -GCUG-GCA--CUGGG--UGuCCGGCgCGCGu -5'
26271 3' -62 NC_005345.2 + 37457 0.67 0.310884
Target:  5'- uCGGCCGUcGAUCCGCcuGCagCGCGgGCGa -3'
miRNA:   3'- -GCUGGCA-CUGGGUGucCG--GCGCgCGU- -5'
26271 3' -62 NC_005345.2 + 45394 0.67 0.310884
Target:  5'- uCGGCCGUccagcggagccaGuCCgACAGGCgGCGCGg- -3'
miRNA:   3'- -GCUGGCA------------CuGGgUGUCCGgCGCGCgu -5'
26271 3' -62 NC_005345.2 + 30441 0.67 0.303567
Target:  5'- cCGACCGggcacACCCccgauccggGCAcGCUGCGCGCGa -3'
miRNA:   3'- -GCUGGCac---UGGG---------UGUcCGGCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 14616 0.67 0.303567
Target:  5'- uCGACgGguacGCCCGCgAGGCCGCG-GCc -3'
miRNA:   3'- -GCUGgCac--UGGGUG-UCCGGCGCgCGu -5'
26271 3' -62 NC_005345.2 + 22058 0.67 0.296384
Target:  5'- cCGACCGcggugGGuCCgGCAcaCCGCGCGCAa -3'
miRNA:   3'- -GCUGGCa----CU-GGgUGUccGGCGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.