miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26272 5' -64.6 NC_005345.2 + 7777 0.67 0.186621
Target:  5'- gGCguCCaugaguccguUGCCgAGCGCUGCGCcgCCGCc -3'
miRNA:   3'- aCGguGG----------ACGG-UCGCGACGCG--GGCGa -5'
26272 5' -64.6 NC_005345.2 + 37507 0.67 0.186621
Target:  5'- cGCCGCCgUGCaGGCGuCUaUGCCUGCUc -3'
miRNA:   3'- aCGGUGG-ACGgUCGC-GAcGCGGGCGA- -5'
26272 5' -64.6 NC_005345.2 + 5845 0.67 0.186621
Target:  5'- aGCCugCUGUgCAGUuccuuaaguuGCcGCGCCUGCUc -3'
miRNA:   3'- aCGGugGACG-GUCG----------CGaCGCGGGCGA- -5'
26272 5' -64.6 NC_005345.2 + 8020 0.67 0.184687
Target:  5'- aGCCGCCagucggaGCCccguaccgcgggcGUGCUGCgGCCCGCg -3'
miRNA:   3'- aCGGUGGa------CGGu------------CGCGACG-CGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 10767 0.67 0.183727
Target:  5'- aGCC-CCUGCCGgccgucgagacagccGCGCUGCGgCagGCg -3'
miRNA:   3'- aCGGuGGACGGU---------------CGCGACGCgGg-CGa -5'
26272 5' -64.6 NC_005345.2 + 37953 0.67 0.181819
Target:  5'- gUGCCACagGCCGGCgucgaccagGCUGCGgaCCUGCg -3'
miRNA:   3'- -ACGGUGgaCGGUCG---------CGACGC--GGGCGa -5'
26272 5' -64.6 NC_005345.2 + 12771 0.67 0.181819
Target:  5'- cGCCGCg-GCC-GCGgaGCgcGCCCGCg -3'
miRNA:   3'- aCGGUGgaCGGuCGCgaCG--CGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 11386 0.67 0.181819
Target:  5'- gGCCGCCUGCgGGCGa-GCaGCUCGa- -3'
miRNA:   3'- aCGGUGGACGgUCGCgaCG-CGGGCga -5'
26272 5' -64.6 NC_005345.2 + 20178 0.67 0.177127
Target:  5'- -uUCACCUGCaggucGCGCaGCGCCuCGCg -3'
miRNA:   3'- acGGUGGACGgu---CGCGaCGCGG-GCGa -5'
26272 5' -64.6 NC_005345.2 + 34772 0.67 0.177127
Target:  5'- cGgCACCgGCCGGUcgccgaGCUGCGCCggguCGCg -3'
miRNA:   3'- aCgGUGGaCGGUCG------CGACGCGG----GCGa -5'
26272 5' -64.6 NC_005345.2 + 11211 0.67 0.177127
Target:  5'- gGgCACC-GUCGGCGUcgagGCGUCCGCg -3'
miRNA:   3'- aCgGUGGaCGGUCGCGa---CGCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 21564 0.67 0.177127
Target:  5'- aUGaUCACCUGCCGGUaauccgGCGCCCGg- -3'
miRNA:   3'- -AC-GGUGGACGGUCGcga---CGCGGGCga -5'
26272 5' -64.6 NC_005345.2 + 27145 0.67 0.177127
Target:  5'- cGUCGagCUGCCcgaGGCGCUGCGCggcgucCCGCc -3'
miRNA:   3'- aCGGUg-GACGG---UCGCGACGCG------GGCGa -5'
26272 5' -64.6 NC_005345.2 + 37510 0.68 0.172542
Target:  5'- cGCgGgCUG-CGGCGCggUGCGCUCGCUc -3'
miRNA:   3'- aCGgUgGACgGUCGCG--ACGCGGGCGA- -5'
26272 5' -64.6 NC_005345.2 + 31639 0.68 0.172542
Target:  5'- -cUCGCCcgGCCGGCGaccgGCgGCCCGCa -3'
miRNA:   3'- acGGUGGa-CGGUCGCga--CG-CGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 34277 0.68 0.168064
Target:  5'- gGCCcgacucGCCUcgGCC-GCGUcgaGCGCCCGCUg -3'
miRNA:   3'- aCGG------UGGA--CGGuCGCGa--CGCGGGCGA- -5'
26272 5' -64.6 NC_005345.2 + 9709 0.68 0.163691
Target:  5'- gGCCGCCgcgugaGCC-GCGCcGCGCgggCCGCg -3'
miRNA:   3'- aCGGUGGa-----CGGuCGCGaCGCG---GGCGa -5'
26272 5' -64.6 NC_005345.2 + 12105 0.68 0.163691
Target:  5'- cGCCGCCgGCCGGaucccgGCU-CGCCCGgUg -3'
miRNA:   3'- aCGGUGGaCGGUCg-----CGAcGCGGGCgA- -5'
26272 5' -64.6 NC_005345.2 + 38985 0.68 0.159419
Target:  5'- uUGCCugUUGCUugcGGCGg-GCGCuCCGCa -3'
miRNA:   3'- -ACGGugGACGG---UCGCgaCGCG-GGCGa -5'
26272 5' -64.6 NC_005345.2 + 23560 0.68 0.159419
Target:  5'- gGUgACCUGUCGGCcgcguccgaGCUGCGgCUGCg -3'
miRNA:   3'- aCGgUGGACGGUCG---------CGACGCgGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.