miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26272 5' -64.6 NC_005345.2 + 43503 0.66 0.223449
Target:  5'- cGCCGCCaagGUCgcGGCGaacccgGCGCUCGCg -3'
miRNA:   3'- aCGGUGGa--CGG--UCGCga----CGCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 13729 0.66 0.217832
Target:  5'- cGCCACacguaCUGCagGGCGgUGCcgaccGCCCGCa -3'
miRNA:   3'- aCGGUG-----GACGg-UCGCgACG-----CGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 26800 0.66 0.212336
Target:  5'- cGCCGCgUcGCaGGCGCUGCuCgCCGCa -3'
miRNA:   3'- aCGGUGgA-CGgUCGCGACGcG-GGCGa -5'
26272 5' -64.6 NC_005345.2 + 5207 0.66 0.211793
Target:  5'- gGCacgGCCgGcCCGGCGCUacacgccgucgggGUGCCCGCg -3'
miRNA:   3'- aCGg--UGGaC-GGUCGCGA-------------CGCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 27208 0.67 0.20696
Target:  5'- gGCaGCggGUCGGCGCaGCGCUCGCa -3'
miRNA:   3'- aCGgUGgaCGGUCGCGaCGCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 34571 0.67 0.205371
Target:  5'- gUGCCGCCcgcacuguccgccgUGUCGGaCGCguucaGCGCCgGCg -3'
miRNA:   3'- -ACGGUGG--------------ACGGUC-GCGa----CGCGGgCGa -5'
26272 5' -64.6 NC_005345.2 + 32504 0.67 0.201703
Target:  5'- gUGCCGucccUCUGCCGGCGg-GCGgCCCGa- -3'
miRNA:   3'- -ACGGU----GGACGGUCGCgaCGC-GGGCga -5'
26272 5' -64.6 NC_005345.2 + 48386 0.67 0.201703
Target:  5'- cGCCGCCgGCCGGgGCUaucccacgaGCaCCGCg -3'
miRNA:   3'- aCGGUGGaCGGUCgCGAcg-------CG-GGCGa -5'
26272 5' -64.6 NC_005345.2 + 17595 0.67 0.201703
Target:  5'- cGCCAUCUGCCcgcggcccaaGGgGCUGUGaugcacgCCGCg -3'
miRNA:   3'- aCGGUGGACGG----------UCgCGACGCg------GGCGa -5'
26272 5' -64.6 NC_005345.2 + 31109 0.67 0.201703
Target:  5'- cGCCGCaacgugGCC-GCGUuccUGCGCUCGCc -3'
miRNA:   3'- aCGGUGga----CGGuCGCG---ACGCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 1468 0.67 0.201702
Target:  5'- aUGCCGUCgGCCGugauGCGgaGCgGCCCGCg -3'
miRNA:   3'- -ACGGUGGaCGGU----CGCgaCG-CGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 42679 0.67 0.201702
Target:  5'- cGCCGCCguaCAGCuCgGCgGCCCGCUc -3'
miRNA:   3'- aCGGUGGacgGUCGcGaCG-CGGGCGA- -5'
26272 5' -64.6 NC_005345.2 + 17808 0.67 0.201183
Target:  5'- aGCCGgaucaucCCUGCCGGCGUgccccuuccCGCCCGg- -3'
miRNA:   3'- aCGGU-------GGACGGUCGCGac-------GCGGGCga -5'
26272 5' -64.6 NC_005345.2 + 18121 0.67 0.196561
Target:  5'- cGCCGCaCUcGCCGGCGCcGuCGuCCCGa- -3'
miRNA:   3'- aCGGUG-GA-CGGUCGCGaC-GC-GGGCga -5'
26272 5' -64.6 NC_005345.2 + 38362 0.67 0.196561
Target:  5'- gGuCCGCCUGCCgcAGCGCgGCugucucgacgGCCgGCa -3'
miRNA:   3'- aC-GGUGGACGG--UCGCGaCG----------CGGgCGa -5'
26272 5' -64.6 NC_005345.2 + 42158 0.67 0.196561
Target:  5'- cGCUGCCUGUCGGCGCccgGCCaGCa -3'
miRNA:   3'- aCGGUGGACGGUCGCGacgCGGgCGa -5'
26272 5' -64.6 NC_005345.2 + 10677 0.67 0.196561
Target:  5'- cGCgGCgCgggaagUGCCcGCGCUGUGCCCGg- -3'
miRNA:   3'- aCGgUG-G------ACGGuCGCGACGCGGGCga -5'
26272 5' -64.6 NC_005345.2 + 29206 0.67 0.191535
Target:  5'- cGCCugCggaaGCUgucccgcgaugaGGCGCUGCcguucaucGCCCGCg -3'
miRNA:   3'- aCGGugGa---CGG------------UCGCGACG--------CGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 10867 0.67 0.191535
Target:  5'- cUGCCGCacg-CGGCGCgucccGUGCCCGCa -3'
miRNA:   3'- -ACGGUGgacgGUCGCGa----CGCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 8965 0.67 0.191534
Target:  5'- cUGCaCGCCgGCCucgaucGCaGCUGCGCgCCGUa -3'
miRNA:   3'- -ACG-GUGGaCGGu-----CG-CGACGCG-GGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.