Results 21 - 40 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26272 | 5' | -64.6 | NC_005345.2 | + | 38566 | 0.69 | 0.132244 |
Target: 5'- cGcCCACCgGCaCGGCGUacgugGCGCUCGCg -3' miRNA: 3'- aC-GGUGGaCG-GUCGCGa----CGCGGGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 41298 | 0.7 | 0.118697 |
Target: 5'- gGCCGCCucggUGCCGGCGCcgGCGgCUGg- -3' miRNA: 3'- aCGGUGG----ACGGUCGCGa-CGCgGGCga -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 45913 | 0.71 | 0.100507 |
Target: 5'- cGCCGCgUGCaCAguGCGCUGCccgaacuGUCCGCUg -3' miRNA: 3'- aCGGUGgACG-GU--CGCGACG-------CGGGCGA- -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 8125 | 0.74 | 0.054684 |
Target: 5'- gGCCGCCgucgucgacgGCUcuuGGcCGCUGCGCCCGUg -3' miRNA: 3'- aCGGUGGa---------CGG---UC-GCGACGCGGGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 21358 | 0.68 | 0.158998 |
Target: 5'- aGCUGCCUGacaaCUGGUacaccgaGCUGCGCCCGUUc -3' miRNA: 3'- aCGGUGGAC----GGUCG-------CGACGCGGGCGA- -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 20589 | 0.69 | 0.13954 |
Target: 5'- gGCCcaaauCCgggGCCGGCGg-GCGCUCGCa -3' miRNA: 3'- aCGGu----GGa--CGGUCGCgaCGCGGGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 18429 | 0.7 | 0.118697 |
Target: 5'- gGCCGugauUCUGUgGGCGaacCUGCGCCCGUg -3' miRNA: 3'- aCGGU----GGACGgUCGC---GACGCGGGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 21498 | 0.76 | 0.038971 |
Target: 5'- cGCCcggagaACCUGCaAGCGCUGUGCCgGCa -3' miRNA: 3'- aCGG------UGGACGgUCGCGACGCGGgCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 41054 | 0.69 | 0.135847 |
Target: 5'- gGCCGCaCUGCUcGCcgaacaGCUGuCGUCCGCUg -3' miRNA: 3'- aCGGUG-GACGGuCG------CGAC-GCGGGCGA- -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 9083 | 0.76 | 0.037881 |
Target: 5'- gGCCGCCgucGCCGGCGac-CGCCCGCa -3' miRNA: 3'- aCGGUGGa--CGGUCGCgacGCGGGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 18487 | 0.7 | 0.118697 |
Target: 5'- aUGCuCGCCgcguucgGCaaaGGCGCUGCGCUCGg- -3' miRNA: 3'- -ACG-GUGGa------CGg--UCGCGACGCGGGCga -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 45727 | 0.69 | 0.132244 |
Target: 5'- cGCCGCCcGCC-GC-C-GCGCCCGCc -3' miRNA: 3'- aCGGUGGaCGGuCGcGaCGCGGGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 16169 | 0.7 | 0.106161 |
Target: 5'- gGCCGCCUGCgccgaggacuacgCGGaCGCggccgGCGUCCGCc -3' miRNA: 3'- aCGGUGGACG-------------GUC-GCGa----CGCGGGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 36234 | 0.71 | 0.100783 |
Target: 5'- aGCCugCUGCCGGUuguuCUGCGCCgGa- -3' miRNA: 3'- aCGGugGACGGUCGc---GACGCGGgCga -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 1360 | 0.71 | 0.087834 |
Target: 5'- cUGCCACgaGCCGGUGCagucGCGUCgGCg -3' miRNA: 3'- -ACGGUGgaCGGUCGCGa---CGCGGgCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 5228 | 0.73 | 0.061179 |
Target: 5'- gGCCgGCCUgaucGCCGacGCGCUGCGCgCCGCc -3' miRNA: 3'- aCGG-UGGA----CGGU--CGCGACGCG-GGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 12105 | 0.68 | 0.163691 |
Target: 5'- cGCCGCCgGCCGGaucccgGCU-CGCCCGgUg -3' miRNA: 3'- aCGGUGGaCGGUCg-----CGAcGCGGGCgA- -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 5668 | 0.68 | 0.159419 |
Target: 5'- gGCCcggACCgaGCCGaccGCGCUGCG-CCGCg -3' miRNA: 3'- aCGG---UGGa-CGGU---CGCGACGCgGGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 17666 | 0.69 | 0.147204 |
Target: 5'- cGgCGCCUacGCC-GCGCU-CGCCCGCc -3' miRNA: 3'- aCgGUGGA--CGGuCGCGAcGCGGGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 10147 | 0.69 | 0.143325 |
Target: 5'- gGCgGCC-GCuCuGCGgaGCGCCCGCc -3' miRNA: 3'- aCGgUGGaCG-GuCGCgaCGCGGGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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