miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26272 5' -64.6 NC_005345.2 + 21934 0.82 0.011733
Target:  5'- -cCCACCUGCgAGCGCUGCGCcgaCCGCUg -3'
miRNA:   3'- acGGUGGACGgUCGCGACGCG---GGCGA- -5'
26272 5' -64.6 NC_005345.2 + 18429 0.7 0.118697
Target:  5'- gGCCGugauUCUGUgGGCGaacCUGCGCCCGUg -3'
miRNA:   3'- aCGGU----GGACGgUCGC---GACGCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 41298 0.7 0.118697
Target:  5'- gGCCGCCucggUGCCGGCGCcgGCGgCUGg- -3'
miRNA:   3'- aCGGUGG----ACGGUCGCGa-CGCgGGCga -5'
26272 5' -64.6 NC_005345.2 + 25357 0.66 0.24104
Target:  5'- cGCCGCCgucCUGGCGUggcaGUGCCgGCUc -3'
miRNA:   3'- aCGGUGGac-GGUCGCGa---CGCGGgCGA- -5'
26272 5' -64.6 NC_005345.2 + 5228 0.73 0.061179
Target:  5'- gGCCgGCCUgaucGCCGacGCGCUGCGCgCCGCc -3'
miRNA:   3'- aCGG-UGGA----CGGU--CGCGACGCG-GGCGa -5'
26272 5' -64.6 NC_005345.2 + 11420 0.73 0.061179
Target:  5'- cGCCgACCaGCCGGCGCcGCGCCgcaGCg -3'
miRNA:   3'- aCGG-UGGaCGGUCGCGaCGCGGg--CGa -5'
26272 5' -64.6 NC_005345.2 + 1360 0.71 0.087834
Target:  5'- cUGCCACgaGCCGGUGCagucGCGUCgGCg -3'
miRNA:   3'- -ACGGUGgaCGGUCGCGa---CGCGGgCGa -5'
26272 5' -64.6 NC_005345.2 + 18257 0.71 0.092812
Target:  5'- cUGCuCGCCgGCC-GCGCcGuCGCCCGCa -3'
miRNA:   3'- -ACG-GUGGaCGGuCGCGaC-GCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 36234 0.71 0.100783
Target:  5'- aGCCugCUGCCGGUuguuCUGCGCCgGa- -3'
miRNA:   3'- aCGGugGACGGUCGc---GACGCGGgCga -5'
26272 5' -64.6 NC_005345.2 + 3745 0.7 0.115518
Target:  5'- cGCCGCCUGUCGGa-CUG-GCuCCGCUg -3'
miRNA:   3'- aCGGUGGACGGUCgcGACgCG-GGCGA- -5'
26272 5' -64.6 NC_005345.2 + 47974 0.71 0.103581
Target:  5'- aGCCGCCcGUguGCGCcGCGCaCGCUc -3'
miRNA:   3'- aCGGUGGaCGguCGCGaCGCGgGCGA- -5'
26272 5' -64.6 NC_005345.2 + 45913 0.71 0.100507
Target:  5'- cGCCGCgUGCaCAguGCGCUGCccgaacuGUCCGCUg -3'
miRNA:   3'- aCGGUGgACG-GU--CGCGACG-------CGGGCGA- -5'
26272 5' -64.6 NC_005345.2 + 9083 0.76 0.037881
Target:  5'- gGCCGCCgucGCCGGCGac-CGCCCGCa -3'
miRNA:   3'- aCGGUGGa--CGGUCGCgacGCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 16169 0.7 0.106161
Target:  5'- gGCCGCCUGCgccgaggacuacgCGGaCGCggccgGCGUCCGCc -3'
miRNA:   3'- aCGGUGGACG-------------GUC-GCGa----CGCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 21498 0.76 0.038971
Target:  5'- cGCCcggagaACCUGCaAGCGCUGUGCCgGCa -3'
miRNA:   3'- aCGG------UGGACGgUCGCGACGCGGgCGa -5'
26272 5' -64.6 NC_005345.2 + 23998 0.71 0.0954
Target:  5'- aGUCGCCguucGUCGGCGCgaucGCGCUCGCc -3'
miRNA:   3'- aCGGUGGa---CGGUCGCGa---CGCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 11227 0.7 0.109397
Target:  5'- gGCaugaCUGCCcGCGCUGCccgcaGCCCGCg -3'
miRNA:   3'- aCGgug-GACGGuCGCGACG-----CGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 18487 0.7 0.118697
Target:  5'- aUGCuCGCCgcguucgGCaaaGGCGCUGCGCUCGg- -3'
miRNA:   3'- -ACG-GUGGa------CGg--UCGCGACGCGGGCga -5'
26272 5' -64.6 NC_005345.2 + 8125 0.74 0.054684
Target:  5'- gGCCGCCgucgucgacgGCUcuuGGcCGCUGCGCCCGUg -3'
miRNA:   3'- aCGGUGGa---------CGG---UC-GCGACGCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 31590 0.72 0.08311
Target:  5'- cUGCCGggcCCUGCuCGGCGCg--GCCCGCg -3'
miRNA:   3'- -ACGGU---GGACG-GUCGCGacgCGGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.