Results 1 - 20 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26272 | 5' | -64.6 | NC_005345.2 | + | 13261 | 0.66 | 0.24104 |
Target: 5'- aUGCCGCC-GUCGGCgaaccGCUGCaCCgGCa -3' miRNA: 3'- -ACGGUGGaCGGUCG-----CGACGcGGgCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 26800 | 0.66 | 0.212336 |
Target: 5'- cGCCGCgUcGCaGGCGCUGCuCgCCGCa -3' miRNA: 3'- aCGGUGgA-CGgUCGCGACGcG-GGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 25507 | 0.66 | 0.235051 |
Target: 5'- gGCUGCUgcgucucgGCCGGCgGCUGCGUaaGCg -3' miRNA: 3'- aCGGUGGa-------CGGUCG-CGACGCGggCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 25357 | 0.66 | 0.24104 |
Target: 5'- cGCCGCCgucCUGGCGUggcaGUGCCgGCUc -3' miRNA: 3'- aCGGUGGac-GGUCGCGa---CGCGGgCGA- -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 43503 | 0.66 | 0.223449 |
Target: 5'- cGCCGCCaagGUCgcGGCGaacccgGCGCUCGCg -3' miRNA: 3'- aCGGUGGa--CGG--UCGCga----CGCGGGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 14679 | 0.66 | 0.229188 |
Target: 5'- cGUCGCCgaUGCCGGgccgGCcGUGCCCGUg -3' miRNA: 3'- aCGGUGG--ACGGUCg---CGaCGCGGGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 36368 | 0.66 | 0.229188 |
Target: 5'- cGCCGCgUacGCgGGCGCgcuccGCGgCCGCg -3' miRNA: 3'- aCGGUGgA--CGgUCGCGa----CGCgGGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 45504 | 0.66 | 0.229188 |
Target: 5'- gGCCGCUgccGCCGG-GCUGCGgacggcacaCCUGCg -3' miRNA: 3'- aCGGUGGa--CGGUCgCGACGC---------GGGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 40073 | 0.66 | 0.231518 |
Target: 5'- cGUCACCgucgaccgcgggcaGCaauGGCGCcGCGCCUGCUc -3' miRNA: 3'- aCGGUGGa-------------CGg--UCGCGaCGCGGGCGA- -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 5207 | 0.66 | 0.211793 |
Target: 5'- gGCacgGCCgGcCCGGCGCUacacgccgucgggGUGCCCGCg -3' miRNA: 3'- aCGg--UGGaC-GGUCGCGA-------------CGCGGGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 13729 | 0.66 | 0.217832 |
Target: 5'- cGCCACacguaCUGCagGGCGgUGCcgaccGCCCGCa -3' miRNA: 3'- aCGGUG-----GACGg-UCGCgACG-----CGGGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 14542 | 0.66 | 0.229188 |
Target: 5'- cGCgCACCcaguugacGCCGGCGCUgaacGCGUCCGaCa -3' miRNA: 3'- aCG-GUGGa-------CGGUCGCGA----CGCGGGC-Ga -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 43380 | 0.66 | 0.24104 |
Target: 5'- gGCaCGCCgagcaCCuGCGcCUGCGCCCGg- -3' miRNA: 3'- aCG-GUGGac---GGuCGC-GACGCGGGCga -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 9050 | 0.66 | 0.24104 |
Target: 5'- gUGaCACCgagcagGCgCGGCGCcauUGCuGCCCGCg -3' miRNA: 3'- -ACgGUGGa-----CG-GUCGCG---ACG-CGGGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 41315 | 0.66 | 0.24104 |
Target: 5'- gUGaUCAgCUGCCgAGCGCccUGCGUCuCGCUc -3' miRNA: 3'- -AC-GGUgGACGG-UCGCG--ACGCGG-GCGA- -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 1990 | 0.66 | 0.235051 |
Target: 5'- gUGCCGCa-GgCGGCGCUcacaGCGCCCccucGCUc -3' miRNA: 3'- -ACGGUGgaCgGUCGCGA----CGCGGG----CGA- -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 542 | 0.66 | 0.235051 |
Target: 5'- aUGCCcuCCgaacaGCCGGCGUggguccuCGCCCGCc -3' miRNA: 3'- -ACGGu-GGa----CGGUCGCGac-----GCGGGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 29332 | 0.66 | 0.235051 |
Target: 5'- gGCCGCCccgggUGUCAGCGCUcGuCGCCgucgGCg -3' miRNA: 3'- aCGGUGG-----ACGGUCGCGA-C-GCGGg---CGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 10096 | 0.66 | 0.235051 |
Target: 5'- cGCCGCCUGCgUAGCGCccacCGgCCGg- -3' miRNA: 3'- aCGGUGGACG-GUCGCGac--GCgGGCga -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 20762 | 0.66 | 0.229188 |
Target: 5'- cUGCCGCCgcGgCGGCGC-GUGCCCu-- -3' miRNA: 3'- -ACGGUGGa-CgGUCGCGaCGCGGGcga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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