Results 21 - 40 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26272 | 5' | -64.6 | NC_005345.2 | + | 14542 | 0.66 | 0.229188 |
Target: 5'- cGCgCACCcaguugacGCCGGCGCUgaacGCGUCCGaCa -3' miRNA: 3'- aCG-GUGGa-------CGGUCGCGA----CGCGGGC-Ga -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 13729 | 0.66 | 0.217832 |
Target: 5'- cGCCACacguaCUGCagGGCGgUGCcgaccGCCCGCa -3' miRNA: 3'- aCGGUG-----GACGg-UCGCgACG-----CGGGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 13261 | 0.66 | 0.24104 |
Target: 5'- aUGCCGCC-GUCGGCgaaccGCUGCaCCgGCa -3' miRNA: 3'- -ACGGUGGaCGGUCG-----CGACGcGGgCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 5207 | 0.66 | 0.211793 |
Target: 5'- gGCacgGCCgGcCCGGCGCUacacgccgucgggGUGCCCGCg -3' miRNA: 3'- aCGg--UGGaC-GGUCGCGA-------------CGCGGGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 37507 | 0.67 | 0.186621 |
Target: 5'- cGCCGCCgUGCaGGCGuCUaUGCCUGCUc -3' miRNA: 3'- aCGGUGG-ACGgUCGC-GAcGCGGGCGA- -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 10677 | 0.67 | 0.196561 |
Target: 5'- cGCgGCgCgggaagUGCCcGCGCUGUGCCCGg- -3' miRNA: 3'- aCGgUG-G------ACGGuCGCGACGCGGGCga -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 18121 | 0.67 | 0.196561 |
Target: 5'- cGCCGCaCUcGCCGGCGCcGuCGuCCCGa- -3' miRNA: 3'- aCGGUG-GA-CGGUCGCGaC-GC-GGGCga -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 12771 | 0.67 | 0.181819 |
Target: 5'- cGCCGCg-GCC-GCGgaGCgcGCCCGCg -3' miRNA: 3'- aCGGUGgaCGGuCGCgaCG--CGGGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 48386 | 0.67 | 0.201703 |
Target: 5'- cGCCGCCgGCCGGgGCUaucccacgaGCaCCGCg -3' miRNA: 3'- aCGGUGGaCGGUCgCGAcg-------CG-GGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 31109 | 0.67 | 0.201703 |
Target: 5'- cGCCGCaacgugGCC-GCGUuccUGCGCUCGCc -3' miRNA: 3'- aCGGUGga----CGGuCGCG---ACGCGGGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 1468 | 0.67 | 0.201702 |
Target: 5'- aUGCCGUCgGCCGugauGCGgaGCgGCCCGCg -3' miRNA: 3'- -ACGGUGGaCGGU----CGCgaCG-CGGGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 42679 | 0.67 | 0.201702 |
Target: 5'- cGCCGCCguaCAGCuCgGCgGCCCGCUc -3' miRNA: 3'- aCGGUGGacgGUCGcGaCG-CGGGCGA- -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 8020 | 0.67 | 0.184687 |
Target: 5'- aGCCGCCagucggaGCCccguaccgcgggcGUGCUGCgGCCCGCg -3' miRNA: 3'- aCGGUGGa------CGGu------------CGCGACG-CGGGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 37953 | 0.67 | 0.181819 |
Target: 5'- gUGCCACagGCCGGCgucgaccagGCUGCGgaCCUGCg -3' miRNA: 3'- -ACGGUGgaCGGUCG---------CGACGC--GGGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 34772 | 0.67 | 0.177127 |
Target: 5'- cGgCACCgGCCGGUcgccgaGCUGCGCCggguCGCg -3' miRNA: 3'- aCgGUGGaCGGUCG------CGACGCGG----GCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 21564 | 0.67 | 0.177127 |
Target: 5'- aUGaUCACCUGCCGGUaauccgGCGCCCGg- -3' miRNA: 3'- -AC-GGUGGACGGUCGcga---CGCGGGCga -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 20178 | 0.67 | 0.177127 |
Target: 5'- -uUCACCUGCaggucGCGCaGCGCCuCGCg -3' miRNA: 3'- acGGUGGACGgu---CGCGaCGCGG-GCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 11211 | 0.67 | 0.177127 |
Target: 5'- gGgCACC-GUCGGCGUcgagGCGUCCGCg -3' miRNA: 3'- aCgGUGGaCGGUCGCGa---CGCGGGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 27208 | 0.67 | 0.20696 |
Target: 5'- gGCaGCggGUCGGCGCaGCGCUCGCa -3' miRNA: 3'- aCGgUGgaCGGUCGCGaCGCGGGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 32504 | 0.67 | 0.201703 |
Target: 5'- gUGCCGucccUCUGCCGGCGg-GCGgCCCGa- -3' miRNA: 3'- -ACGGU----GGACGGUCGCgaCGC-GGGCga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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