miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26272 5' -64.6 NC_005345.2 + 10096 0.66 0.235051
Target:  5'- cGCCGCCUGCgUAGCGCccacCGgCCGg- -3'
miRNA:   3'- aCGGUGGACG-GUCGCGac--GCgGGCga -5'
26272 5' -64.6 NC_005345.2 + 10147 0.69 0.143325
Target:  5'- gGCgGCC-GCuCuGCGgaGCGCCCGCc -3'
miRNA:   3'- aCGgUGGaCG-GuCGCgaCGCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 10677 0.67 0.196561
Target:  5'- cGCgGCgCgggaagUGCCcGCGCUGUGCCCGg- -3'
miRNA:   3'- aCGgUG-G------ACGGuCGCGACGCGGGCga -5'
26272 5' -64.6 NC_005345.2 + 10767 0.67 0.183727
Target:  5'- aGCC-CCUGCCGgccgucgagacagccGCGCUGCGgCagGCg -3'
miRNA:   3'- aCGGuGGACGGU---------------CGCGACGCgGg-CGa -5'
26272 5' -64.6 NC_005345.2 + 10867 0.67 0.191535
Target:  5'- cUGCCGCacg-CGGCGCgucccGUGCCCGCa -3'
miRNA:   3'- -ACGGUGgacgGUCGCGa----CGCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 11211 0.67 0.177127
Target:  5'- gGgCACC-GUCGGCGUcgagGCGUCCGCg -3'
miRNA:   3'- aCgGUGGaCGGUCGCGa---CGCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 11227 0.7 0.109397
Target:  5'- gGCaugaCUGCCcGCGCUGCccgcaGCCCGCg -3'
miRNA:   3'- aCGgug-GACGGuCGCGACG-----CGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 11386 0.67 0.181819
Target:  5'- gGCCGCCUGCgGGCGa-GCaGCUCGa- -3'
miRNA:   3'- aCGGUGGACGgUCGCgaCG-CGGGCga -5'
26272 5' -64.6 NC_005345.2 + 11420 0.73 0.061179
Target:  5'- cGCCgACCaGCCGGCGCcGCGCCgcaGCg -3'
miRNA:   3'- aCGG-UGGaCGGUCGCGaCGCGGg--CGa -5'
26272 5' -64.6 NC_005345.2 + 11576 0.74 0.051693
Target:  5'- cGCCugCaGCCcGC-CUGCGCCCGCc -3'
miRNA:   3'- aCGGugGaCGGuCGcGACGCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 12105 0.68 0.163691
Target:  5'- cGCCGCCgGCCGGaucccgGCU-CGCCCGgUg -3'
miRNA:   3'- aCGGUGGaCGGUCg-----CGAcGCGGGCgA- -5'
26272 5' -64.6 NC_005345.2 + 12755 0.66 0.23446
Target:  5'- cGCCACCcgGCCgcggcagacguGGCGC-GCGuggaccaCCCGCa -3'
miRNA:   3'- aCGGUGGa-CGG-----------UCGCGaCGC-------GGGCGa -5'
26272 5' -64.6 NC_005345.2 + 12771 0.67 0.181819
Target:  5'- cGCCGCg-GCC-GCGgaGCgcGCCCGCg -3'
miRNA:   3'- aCGGUGgaCGGuCGCgaCG--CGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 13261 0.66 0.24104
Target:  5'- aUGCCGCC-GUCGGCgaaccGCUGCaCCgGCa -3'
miRNA:   3'- -ACGGUGGaCGGUCG-----CGACGcGGgCGa -5'
26272 5' -64.6 NC_005345.2 + 13316 0.69 0.147204
Target:  5'- aGCCACCcGCC-GCGCccuCGCCCGaCa -3'
miRNA:   3'- aCGGUGGaCGGuCGCGac-GCGGGC-Ga -5'
26272 5' -64.6 NC_005345.2 + 13599 0.66 0.24104
Target:  5'- gGCUcgACCcGCCGGCGgUGCccgagcCCCGCg -3'
miRNA:   3'- aCGG--UGGaCGGUCGCgACGc-----GGGCGa -5'
26272 5' -64.6 NC_005345.2 + 13729 0.66 0.217832
Target:  5'- cGCCACacguaCUGCagGGCGgUGCcgaccGCCCGCa -3'
miRNA:   3'- aCGGUG-----GACGg-UCGCgACG-----CGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 13860 0.71 0.103581
Target:  5'- gGCCGuCCacaGCCA-CGUUGCGCCUGCUc -3'
miRNA:   3'- aCGGU-GGa--CGGUcGCGACGCGGGCGA- -5'
26272 5' -64.6 NC_005345.2 + 14416 0.68 0.154837
Target:  5'- cGCCgacGCCUGCCGggcgaucgaggucGCGCUcUGCUCGCUc -3'
miRNA:   3'- aCGG---UGGACGGU-------------CGCGAcGCGGGCGA- -5'
26272 5' -64.6 NC_005345.2 + 14542 0.66 0.229188
Target:  5'- cGCgCACCcaguugacGCCGGCGCUgaacGCGUCCGaCa -3'
miRNA:   3'- aCG-GUGGa-------CGGUCGCGA----CGCGGGC-Ga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.